View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2789_low_3 (Length: 349)
Name: NF2789_low_3
Description: NF2789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2789_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 46764944 - 46765264
Alignment:
| Q |
18 |
gttgacaacgagaaatctcctcagacaatcctcgagcacgagtaagagtcttctcatatattcatctatgattgaagtcatgtttgaaagagtttatttg |
117 |
Q |
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| T |
46764944 |
gttgacaacgagaaatctcctcagacaatcctcgagcacgagtaagagtcttctcatatattcatctatgattgaagtcatgtttgaaagagtttatttg |
46765043 |
T |
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| Q |
118 |
tgctcatctcataatttgactatttatattagtgtttggatacatttataaaaatagtttatttccacaagatccacagaataactaatggttaattaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46765044 |
tgctcatctcataatttgactatttatattagtgtttggatacatttataaaaatagtttatttccacaagatccacagaataactaatggttaattaag |
46765143 |
T |
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| Q |
218 |
ctcatttgaataacatattgaataagcatttaattagaatgcactctgtaacagttaagtttatgattgtcnnnnnnnctcattaagcaaaagcttttgc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46765144 |
ctcatttgaataacatattgaataagcatttaattagaatgcactctgtaacagttaagtttatgattgtctttttttctcattaagcaaaagcttttgc |
46765243 |
T |
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| Q |
318 |
attttctcattttaaattcat |
338 |
Q |
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||||||||||||||||||||| |
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| T |
46765244 |
attttctcattttaaattcat |
46765264 |
T |
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