View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2789_low_4 (Length: 344)
Name: NF2789_low_4
Description: NF2789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2789_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 44753932 - 44754251
Alignment:
| Q |
9 |
acatcatcaccctttgttagattcaattcaagctacaaccacaataaccaactaccaagatacccttcttccactcttagctttagttctcctgaatcaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44753932 |
acatcatcaccctttgttagattcaattcaagctacaacaacaataaccaactaccaagatacccttcttccactcttagctttagttctcctgaatcaa |
44754031 |
T |
|
| Q |
109 |
atcccatgcattggaatagcttccccaattacgctactactcaaaatcaaccatttagtaataataggaacaataataacctaagcactttaaactttgg |
208 |
Q |
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|||||||||||||||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44754032 |
atcccatgcattggaatagcttcctcaactatgctactactcaaaatcaaccatatagtaataataggaacaataataacctaagcactttaaactttgg |
44754131 |
T |
|
| Q |
209 |
tagacaaaacacaatggaaagtatataccaaacctacatgcnnnnnnncaacaatagttcaaacatttcacaacatgtaggtttacaagatagtactata |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44754132 |
tagacaaaacacaatggaaagtatataccaaacctacatgcaaaaaaacaacaatagttcaaacatttcacaacatgtaggtttacaagatagtactata |
44754231 |
T |
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| Q |
309 |
tctgcagcaacaaaagctat |
328 |
Q |
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|||||||||||||||||||| |
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| T |
44754232 |
tctgcagcaacaaaagctat |
44754251 |
T |
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