View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2789_low_5 (Length: 330)

Name: NF2789_low_5
Description: NF2789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2789_low_5
NF2789_low_5
[»] chr6 (4 HSPs)
chr6 (7-167)||(13123336-13123493)
chr6 (258-315)||(13115549-13115604)
chr6 (184-228)||(13123295-13123339)
chr6 (173-229)||(20891677-20891733)
[»] scaffold0338 (1 HSPs)
scaffold0338 (176-229)||(18667-18720)
[»] scaffold0035 (1 HSPs)
scaffold0035 (170-222)||(71415-71468)
[»] chr8 (1 HSPs)
chr8 (176-229)||(15061947-15062000)
[»] scaffold0171 (1 HSPs)
scaffold0171 (129-167)||(2732-2770)
[»] chr2 (1 HSPs)
chr2 (170-230)||(16592321-16592382)
[»] chr3 (1 HSPs)
chr3 (73-167)||(2278284-2278379)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 13123493 - 13123336
Alignment:
Q  7 atgcataagttggttttcataaaacttgcagcagaataatcatcatacataattaggtctgatcacatacataataatagtctcagcagataaatccata 106  Q
    |||||||| ||||||||||| | ||||||||| ||| |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  13123493 atgcataaattggttttcattatacttgcagcggaaaaatcatcatacataattaggtct---cacatacataataatagtctcagcagataaatccata 13123397  T
Q  107 aacaaataaatgacataaaacaaaagttccgacactcccaaatcagagcctaactagactc 167  Q
    |||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  13123396 aacaaataaacgacataaaacaaaagtcccgacactcccatatcagagcctaactagactc 13123336  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 13115604 - 13115549
Alignment:
Q  258 catccacatttgagatagaatatgtggctttgcaatatatccttccatgcctataaat 315  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||    
T  13115604 catccacatttgagaaa--atatgtggctttgcaatatatccttccatgcctataaat 13115549  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 13123339 - 13123295
Alignment:
Q  184 actccaagttaatcctcaagccctcacaagcaataagaaatcaat 228  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  13123339 actccaagttaatcctcaagcactcacaagcaataagaaatcaat 13123295  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 20891677 - 20891733
Alignment:
Q  173 gataagaggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatc 229  Q
    ||||||||||| ||||||| || ||||| ||  ||||||||||||||||||||||||    
T  20891677 gataagaggtagctccaagctagtcctcgagtactcacaagcaataagaaatcaatc 20891733  T

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Target: scaffold0338 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 18720 - 18667
Alignment:
Q  176 aagaggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatc 229  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||| ||||||    
T  18720 aagaggtaactccaagctaatcctcaagcactcacaagaaataagaactcaatc 18667  T

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Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 71468 - 71415
Alignment:
Q  170 aaagataag-aggtaactccaagttaatcctcaagccctcacaagcaataagaa 222  Q
    ||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||    
T  71468 aaagataaggaggtagctccaagctaatcctcaagcactcacaagcaataagaa 71415  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 15061947 - 15062000
Alignment:
Q  176 aagaggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatc 229  Q
    |||||||| ||||||| |||||||||||| ||||||||||||| ||| ||||||    
T  15061947 aagaggtagctccaagctaatcctcaagcactcacaagcaataggaactcaatc 15062000  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 2732 - 2770
Alignment:
Q  129 aaagttccgacactcccaaatcagagcctaactagactc 167  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  2732 aaagtcccgacactcctaaatcagagcctaactagactc 2770  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 16592382 - 16592321
Alignment:
Q  170 aaagataag-aggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatcc 230  Q
    ||||||||| ||||| |||||| |||| |||||||| ||||| ||||||||||| |||||||    
T  16592382 aaagataaggaggtagctccaaattaaccctcaagcactcactagcaataagaactcaatcc 16592321  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 2278284 - 2278379
Alignment:
Q  73 atacataataatagtctcagcagataaatccataaacaaataaatgacataaaacaaa---agttccgacactcccaaatcagagcctaactagactc 167  Q
    ||||||| | ||||||||||||  ||||||||| | || ||||| |||| |||| |||   ||| | |||||||| ||||||||||||||||||||||    
T  2278284 atacatagtcatagtctcagca--taaatccatcatcagataaaagacacaaaagaaacaaagtcctgacactcctaaatcagagcctaactagactc 2278379  T

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