View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2790_high_1 (Length: 620)
Name: NF2790_high_1
Description: NF2790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2790_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 608
Target Start/End: Original strand, 32688438 - 32689027
Alignment:
| Q |
18 |
aacatagacactaatttctgaattttagaagactcattcaaaacttccatgtatgtaagttattttaaacatcaattataaagaaatattttcaaacttg |
117 |
Q |
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| T |
32688438 |
aacatagacactaatttctgaattttagaagactcattcaaaacttccatgcatgtaagttattttaaacatcaattataaagaaatattttcaaacgag |
32688537 |
T |
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| Q |
118 |
cagatcctatagcaaaaactgtccagtagatgaacttgtcgaacagaagcttcccttgtaaacttaaaaaatttacatgcaaatttataatagtcaatag |
217 |
Q |
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| T |
32688538 |
cagatcctatagcaaaaactgtccagtagatgaacttgtcgaacataaacttcccttgtaaacttaaaaaatttacatgcaaatttataatagtcaatag |
32688637 |
T |
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| Q |
218 |
ttatctgnnnnnnnnnnntacttgttatcataatcataatgaaaaccatataagcatgatcactcaccatatatcgcccaaatagctcttcgcctttcag |
317 |
Q |
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| T |
32688638 |
ttatctgaaaaaaaaatatacttgttatcataatcataatgaaaaccatataagcatgatcactcaccatatatcgcccaaatagctcttcgcctttcag |
32688737 |
T |
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| Q |
318 |
gagtcattagaagagttcctgcgagaaaagaacccaatataaattgactcaactcacaccacaaaaccgaaataattaacatcctcattttaaggaaaga |
417 |
Q |
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| T |
32688738 |
gagtcattagaagagttcctgagggaaaagaacccaatataaattg-ctcaactcacaccacaaaaccaaaataattaacatcctcattttaaggaaaga |
32688836 |
T |
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| Q |
418 |
taatagaaagctaacccaagtaaaatgttttagcatattctgcacaaatttctccacatctatcatatgcttcactcaacaaactcaaattcccaggcaa |
517 |
Q |
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| T |
32688837 |
taatagaaagctaacccaagtaaaatgttttagcatattctgcacaaatttctccacatctatcatatgcttcactcaacaaactcaaattcccaggcaa |
32688936 |
T |
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| Q |
518 |
aacaatttccggtttcacttcaagttcaccggtagagctcagcttcctcttaaccaaagacgcctgcttcagaaccacatcatataccttc |
608 |
Q |
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| T |
32688937 |
aacaatttccggtttcacttcaagttcaccggtagagctcagcttcctcttaaccaaagacgcctgcttcagaaccacatcatataccttc |
32689027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 32688245 - 32688287
Alignment:
| Q |
22 |
tagacactaatttctgaattttagaagactcattcaaaacttc |
64 |
Q |
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| T |
32688245 |
tagacactaatttctgaaatttagaggactcattcaaaacttc |
32688287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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