View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2790_high_10 (Length: 239)
Name: NF2790_high_10
Description: NF2790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2790_high_10 |
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| [»] chr7 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 32839061 - 32838834
Alignment:
| Q |
11 |
catcatcattctctctccccctccacgtctctgcttaaccttccacaccaccaacaacaacaacctctcaaatgtaatatttagaccaaaaattcaacca |
110 |
Q |
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| T |
32839061 |
catcatcattctctctccccctccacgtctcttcttacccatccacaccaccaacaacaacagcctctcaaatgtaatatttagatcaaaaattcaacca |
32838962 |
T |
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| Q |
111 |
atcaataccatcaattagctatataaatcctcaactcaagctgcatataataagaatcaatatgtaattaattgacttttggataaattacatcaagata |
210 |
Q |
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| T |
32838961 |
atcaataccatcaat-agctatataaatcctcaattcaagctgcatataataagaatcaatatgtaattaattgacttttgaataaattacatcaagata |
32838863 |
T |
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| Q |
211 |
aactagcagttgataccacgctgactatt |
239 |
Q |
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| T |
32838862 |
aactagcagttgataccacgctgactatt |
32838834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 328390 - 328473
Alignment:
| Q |
56 |
caccaccaacaacaacaacctctcaaatgtaatatttagaccaaaaattcaaccaatcaataccatcaattagctatataaatc |
139 |
Q |
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| T |
328390 |
caccaccaacaacaacaacctctcaaatgtaatatttagagcagaaattcaaccaatcaataccatcaattagctatttaaatc |
328473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 26049556 - 26049477
Alignment:
| Q |
65 |
caacaacaacctctcaaatgtaatatttagaccaaaaattcaaccaatcaataccatcaattagctatataaatcctcaa |
144 |
Q |
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| T |
26049556 |
caacaacagtctcccaaatgtaatatttggatcagaaattcaaccaatcaataccatcaattagctatataaatcctcaa |
26049477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 53731530 - 53731593
Alignment:
| Q |
62 |
caacaacaacaacctctcaaatgtaatatttagaccaaaaattcaaccaatcaataccatcaat |
125 |
Q |
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| T |
53731530 |
caacagcaacaacctctcaaatgtaatatttacaccaaaaattcaaccaatcaataccatcaat |
53731593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 5826918 - 5826997
Alignment:
| Q |
65 |
caacaacaacctctcaaatgtaatatttagaccaaaaattcaaccaatcaataccatcaattagctatataaatcctcaa |
144 |
Q |
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| T |
5826918 |
caacaacagtctcccaaatgtaatatttggaccagaaattcaaccaatcaataccatcaattaactatataaatcttcaa |
5826997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 49588950 - 49588986
Alignment:
| Q |
203 |
tcaagataaactagcagttgataccacgctgactatt |
239 |
Q |
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| T |
49588950 |
tcaagataaactagcagttgataccacactgactatt |
49588986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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