View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2790_high_12 (Length: 236)
Name: NF2790_high_12
Description: NF2790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2790_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 217
Target Start/End: Complemental strand, 34835143 - 34834956
Alignment:
| Q |
30 |
gagtttgcatgcatgctactattgttttataaggatgtcaacctaattgagatgtctatcatcaaatatttcggtacatgttaatacacttagcttnnnn |
129 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34835143 |
gagtatgcatgcatgctactattgttttataaggatgtcaacctaattaagatgtctatcatcaaacatttcggtacatgttaatacacttagcttaaaa |
34835044 |
T |
|
| Q |
130 |
nnngaatcataaatgtaagaagttcatttactcaaataaaaaatacgaagtccatttccttaac-aaaaaatatgagaattcgacgtga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34835043 |
aaa-aatcataaatgtaagaagttcatttactcaaataaaaaatacgaagtccatttccttaacaaaaaaatatgagaattcgacgtga |
34834956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 30 - 217
Target Start/End: Complemental strand, 28963835 - 28963649
Alignment:
| Q |
30 |
gagtttgcatgcatgctactattgttttataaggatgtcaacctaattgagatgtctatcatcaaatatttcggtacatgttaatacacttagcttnnnn |
129 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28963835 |
gagtatgcatgcatggtactattgttttataaggatgtcaacctaattgagatatctatcatcaaacatttcggtacatgttaatacacttagcttaaaa |
28963736 |
T |
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| Q |
130 |
nnngaatcataaatgtaagaagttcatttactcaaataaaaaatacgaagtccatttccttaacaaaaaatatgagaattcgacgtga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28963735 |
aaa-aatcataaatgtaagaagttcatttactcaaataaaaaatacgacgtccatttccttaacaaaaaatatgagaattcgacgtga |
28963649 |
T |
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