View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2790_high_3 (Length: 489)

Name: NF2790_high_3
Description: NF2790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2790_high_3
NF2790_high_3
[»] chr6 (15 HSPs)
chr6 (22-479)||(7138144-7138601)
chr6 (18-176)||(7135217-7135375)
chr6 (25-178)||(7132301-7132454)
chr6 (377-463)||(8677138-8677224)
chr6 (47-154)||(19633118-19633228)
chr6 (25-133)||(8913372-8913480)
chr6 (47-126)||(6417110-6417189)
chr6 (47-98)||(6423923-6423974)
chr6 (48-97)||(28935357-28935406)
chr6 (47-99)||(6410713-6410765)
chr6 (39-98)||(14809709-14809768)
chr6 (47-95)||(10579088-10579136)
chr6 (29-96)||(6403578-6403645)
chr6 (48-83)||(9412143-9412178)
chr6 (47-95)||(6395555-6395603)
[»] chr3 (3 HSPs)
chr3 (39-131)||(51763344-51763436)
chr3 (51-126)||(13469608-13469683)
chr3 (48-88)||(1657546-1657586)
[»] chr1 (2 HSPs)
chr1 (47-154)||(19467362-19467469)
chr1 (48-109)||(7555217-7555278)
[»] chr7 (1 HSPs)
chr7 (47-163)||(10615731-10615847)
[»] chr4 (4 HSPs)
chr4 (47-87)||(553777-553817)
chr4 (47-131)||(1755571-1755655)
chr4 (29-78)||(571330-571379)
chr4 (55-87)||(53760291-53760323)
[»] chr8 (5 HSPs)
chr8 (26-131)||(5766559-5766664)
chr8 (26-130)||(14004140-14004244)
chr8 (47-131)||(17642889-17642973)
chr8 (47-109)||(17635632-17635694)
chr8 (48-88)||(28246055-28246095)
[»] chr5 (1 HSPs)
chr5 (47-87)||(28532831-28532871)


Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 22 - 479
Target Start/End: Original strand, 7138144 - 7138601
Alignment:
Q  22 acgtgttggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcga 121  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7138144 acgtgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcga 7138243  T
Q  122 tgtgagtttctttagtgggaaatgagatattttgtggagaagcatgtcgaggtcaccatttccattttgtctgtccttttggtgcctaatttcgaatatt 221  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7138244 tgtgagtttctttagtgggaaatgagagattttgcggagaagtatgtcgaggtcaccatttccattttgtttgtccttttggtgcctaatttcgaatatt 7138343  T
Q  222 actcttcttctaggctatggcttttacgttcatctcattcttcatttcagtatttcttcgtgtttttattgttagtttcatttctcgtcaatttgttttt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7138344 actcttcttctaggctatggcttttacgttcatctcattcttcatttcagtatttcttcgtgtttttattgttagtttcatttctcgtcaatttgttttt 7138443  T
Q  322 ctctgctagtagagatggttagagcagaagttgatgaaaaagacaatcttaaatgaatcatcagcttcacggatgcatcaagtgatgctttgtttgaaga 421  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  7138444 ctctgctagtagagatggttagagcagaagttgatgaaaaagacgatcttaaatgaatcatcagcttcacggatgcatcaagtgatgctctctttgaaga 7138543  T
Q  422 tatttgtctgaagtctcttcgtctttaaatatttatgatgttagttaatgagcctatg 479  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7138544 tatttgtctgaagtctcttcgtctttaaatatttatgatgtttgttaatgagcctatg 7138601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 7135217 - 7135375
Alignment:
Q  18 agacacgtgttggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaa 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7135217 agacacgtgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaa 7135316  T
Q  118 gcgatgtgagtttctttagtgggaaatgagatattttgtggagaagcatgtcgaggtca 176  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||    
T  7135317 gcgatgtgagtttctttagtgggaaaggagagattttgtggagaagcatgtcaaggtca 7135375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 25 - 178
Target Start/End: Original strand, 7132301 - 7132454
Alignment:
Q  25 tgttggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgt 124  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7132301 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgt 7132400  T
Q  125 gagtttctttagtgggaaatgagatattttgtggagaagcatgtcgaggtcacc 178  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| ||||||||    
T  7132401 gagtttctttagtgggaaaggagagattttgtggagaagcatgtcaaggtcacc 7132454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 377 - 463
Target Start/End: Original strand, 8677138 - 8677224
Alignment:
Q  377 aatcatcagcttcacggatgcatcaagtgatgctttgtttgaagatatttgtctgaagtctcttcgtctttaaatatttatgatgtt 463  Q
    |||||||||||| ||||||||||||| |||||||||||| |||||| |||||||||||| | | |||||||||||||||| ||||||    
T  8677138 aatcatcagctttacggatgcatcaaatgatgctttgttcgaagatttttgtctgaagtttgtacgtctttaaatatttaagatgtt 8677224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 19633118 - 19633228
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttg---gagatactaagcgatgtgagtttctttagtgggaaa 143  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||||| |  |||||||   ||||||| ||| |||||||||||||| | |||| ||    
T  19633118 caaagttgtaatgctttcggagaaagctcgcaacccatttgtgggaaaggggaattggttgctagagatacaaagagatgtgagtttcttcaatgggtaa 19633217  T
Q  144 tgagatatttt 154  Q
     |||| |||||    
T  19633218 cgagagatttt 19633228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 8913480 - 8913372
Alignment:
Q  25 tgttggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgt 124  Q
    ||||||||||||  ||||| | |||||||||||| ||||  || ||| || |||||||||| | |||||||||   ||||||||||||| | ||||||||    
T  8913480 tgttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatgt 8913381  T
Q  125 gagtttctt 133  Q
    |||||||||    
T  8913380 gagtttctt 8913372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 6417110 - 6417189
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtga 126  Q
    |||||||||| | ||||||||||||||||| |||||||||   ||||| ||| |||||||||||||| |||| |||||||    
T  6417110 caaagttgtattcttttgggagaaagctcgtaacccatttacgggaaaagtgggttggttggagatattaagtgatgtga 6417189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 6423923 - 6423974
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtg 98  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  6423923 caaagttgttatgttttgggagaaagctcgcaacccatttgtgggaacggtg 6423974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 28935357 - 28935406
Alignment:
Q  48 aaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggt 97  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  28935357 aaagttgtaatgttttgggagaaggctcgcaacccttttgtgggaaaggt 28935406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 6410713 - 6410765
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgt 99  Q
    ||||||||||||||||||||||||| || ||||||||||| | ||||||||||    
T  6410713 caaagttgtaatgttttgggagaaaacttgcaacccatttatgggaaaggtgt 6410765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 14809709 - 14809768
Alignment:
Q  39 agagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtg 98  Q
    ||||| ||||||||||||||||||||||||||| || ||||||| ||||  |||||||||    
T  14809709 agagaggccaaagttgtaatgttttgggagaaatcttgcaacccttttgcgggaaaggtg 14809768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 10579136 - 10579088
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaag 95  Q
    ||||||||| |||||||||||||||||||| ||||||| ||| ||||||    
T  10579136 caaagttgttatgttttgggagaaagctcgtaacccatctgtgggaaag 10579088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 6403578 - 6403645
Alignment:
Q  29 ggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaagg 96  Q
    ||||||||||||||| | |||||| || |  ||| |||||||||||||||||||||| || |||||||    
T  6403578 ggaacaatcaagagaggtcaaagtagtgacctttcgggagaaagctcgcaacccattagtgggaaagg 6403645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 9412143 - 9412178
Alignment:
Q  48 aaagttgtaatgttttgggagaaagctcgcaaccca 83  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9412143 aaagttgtaatattttgggagaaagctcgcaaccca 9412178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 6395555 - 6395603
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaag 95  Q
    |||||||||||| |||||||||| |||| ||||||||| ||| ||||||    
T  6395555 caaagttgtaatattttgggagagagcttgcaacccatctgtgggaaag 6395603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 51763436 - 51763344
Alignment:
Q  39 agagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttc 131  Q
    ||||||| |||||||||||| ||||| || ||| |||||||||||||||||||||||||  | || ||||||| | |||| ||||||||||||    
T  51763436 agagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttgtaggaaaggtaagctgtttggagagattaagtgatgtgagtttc 51763344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 13469683 - 13469608
Alignment:
Q  51 gttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtga 126  Q
    |||||| | ||||||||||||||||| |||||||||| |||||  ||| |||||||||||| | |||| |||||||    
T  13469683 gttgtattcttttgggagaaagctcgtaacccatttgcaggaacagtgggttggttggagagattaagtgatgtga 13469608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 1657546 - 1657586
Alignment:
Q  48 aaagttgtaatgttttgggagaaagctcgcaacccatttgt 88  Q
    |||||| |||||||||| ||||||||| |||||||||||||    
T  1657546 aaagttttaatgttttgagagaaagcttgcaacccatttgt 1657586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 19467469 - 19467362
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttctttagtgggaaatga 146  Q
    |||||||||||| ||||| | |||| |||||||||||||||  |||| |||||||  |||||||||| | || ||||||||||| || | ||||||||||    
T  19467469 caaagttgtaatattttgagtgaaaactcgcaacccatttgcgggaatggtgtgtctgttggagataatgagagatgtgagttttttcaatgggaaatga 19467370  T
Q  147 gatatttt 154  Q
    || |||||    
T  19467369 gagatttt 19467362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 7555217 - 7555278
Alignment:
Q  48 aaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttgga 109  Q
    ||||||||||| |||||||||||||||||||| ||| ||| ||| | |||| ||||||||||    
T  7555217 aaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttgga 7555278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 10615731 - 10615847
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttctttagtgggaaatga 146  Q
    |||||||||||| ||||||||||||||||| ||||||||||  ||||  ||| |||||||||| ||| |||| |||||||  |||  |  ||||||| ||    
T  10615731 caaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaactgtgggttggttggaaatattaagtgatgtgatgttcaatgatgggaaacga 10615830  T
Q  147 gatattttgtggagaag 163  Q
    || |||||| |||||||    
T  10615831 gagattttgcggagaag 10615847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 553777 - 553817
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttg 87  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  553777 caaagttgtaatgttttgggagaaagctcgcaacccatttg 553817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 1755571 - 1755655
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttc 131  Q
    |||||||||||| ||||| ||||||||| ||||||| || || |||| || |||||||||||||| | ||| |||||| ||||||    
T  1755571 caaagttgtaatcttttgagagaaagcttgcaaccctttggtgggaatggcgtgttggttggagagattaaacgatgtaagtttc 1755655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 571330 - 571379
Alignment:
Q  29 ggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgca 78  Q
    ||||||||  ||||||| |||||||||||| ||||||||||| |||||||    
T  571330 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcgca 571379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 53760323 - 53760291
Alignment:
Q  55 taatgttttgggagaaagctcgcaacccatttg 87  Q
    ||||||||||| |||||||||||||||||||||    
T  53760323 taatgttttggaagaaagctcgcaacccatttg 53760291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 5766664 - 5766559
Alignment:
Q  26 gttggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtg 125  Q
    ||||||||||  ||| || | ||||||||||||||| || |||||||||||||| ||||| | ||||| | || |||||||||| | | | |||||||||    
T  5766664 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 5766565  T
Q  126 agtttc 131  Q
    ||||||    
T  5766564 agtttc 5766559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 14004140 - 14004244
Alignment:
Q  26 gttggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtg 125  Q
    ||||||||||  ||| || | ||||||||||||||| || |||||||||||||| ||||| | ||||| | || |||||||||| | | | |||||||||    
T  14004140 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtg 14004239  T
Q  126 agttt 130  Q
    |||||    
T  14004240 agttt 14004244  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 17642973 - 17642889
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttc 131  Q
    |||||||||||| || |||||||||||| | |||||||| || |||| |||| | |||||||||| | | || ||||||||||||    
T  17642973 caaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagtttc 17642889  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 17635694 - 17635632
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttgga 109  Q
    |||||||||||| ||  ||||||||||||| |||||||| || |||| |||| ||||||||||    
T  17635694 caaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttgga 17635632  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 28246095 - 28246055
Alignment:
Q  48 aaagttgtaatgttttgggagaaagctcgcaacccatttgt 88  Q
    |||||| |||||||||| ||||||||| |||||||||||||    
T  28246095 aaagttttaatgttttgagagaaagcttgcaacccatttgt 28246055  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 28532831 - 28532871
Alignment:
Q  47 caaagttgtaatgttttgggagaaagctcgcaacccatttg 87  Q
    |||||||||||||||||| || ||||||||||| |||||||    
T  28532831 caaagttgtaatgttttgtgaaaaagctcgcaatccatttg 28532871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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