View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2790_high_5 (Length: 433)
Name: NF2790_high_5
Description: NF2790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2790_high_5 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: scaffold0102 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 25 - 423
Target Start/End: Complemental strand, 32118 - 31720
Alignment:
| Q |
25 |
tgtgcttctaatttaaactataacctgtgctacgaaacctttttatggtataagtgtcaagaattttgagtaacacatgattgttagtgcacctaggagt |
124 |
Q |
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| T |
32118 |
tgtgcttctaatttaaactatatcctgtgctacgaaacctttttatggtataagtttcaagaattttgagtaacacatgattgttagtgcacctaggagt |
32019 |
T |
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| Q |
125 |
cttaaattggttcaatgcaaccccattggctatgaaattatccaaaatcttcttgaaagtccctctctccaaaatgcaaagttcaagtggcccaattgaa |
224 |
Q |
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| T |
32018 |
cttaaattggttcaatgcaaccccattggctatgaaattatccaaaatcttcttgaaagtccctctctccaaaatgcaaagttcaagtggcccaattgaa |
31919 |
T |
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| Q |
225 |
tttgtttttcttgacactacatatccatgatcagcaaaagataggtccatttctctgcaacaatcatcaagtacattgtcatctacctctcctttaatct |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31918 |
tttgtttttcttgacactacatatccatgatcagcaaaagataggtccatttctctgcaacaatcatcaagtacattgtcatctacctctcctttaatct |
31819 |
T |
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| Q |
325 |
cccagtagataacgtagtgaccaggttcattagttacatctgcattgctggtaaaatcaacaatttcggctcttgctttatttaaaatctgtgctcctc |
423 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31818 |
cccagtaaataacgtagtgaccaggttcattagttacatctgcattgctggtaaaatcaacaatttcggctcttgctttatttaaaatctgtgatcctc |
31720 |
T |
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