View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2790_high_6 (Length: 336)
Name: NF2790_high_6
Description: NF2790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2790_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 7723485 - 7723790
Alignment:
| Q |
11 |
caaaggcaacacgtgcaagtaccaataataacaacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaa |
110 |
Q |
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| T |
7723485 |
caaaggcaacacgtgcaagtaccaataataacaacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaa |
7723584 |
T |
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| Q |
111 |
cggccctcgaggcccaaaggtnnnnnnnntactctaaatatatacattccaaatatataactttatttcaatcttttgatagtttcaatttgaatgggaa |
210 |
Q |
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| T |
7723585 |
cggccctcgaggcccaaaggtaaaaaaaatactctaaatata-atataacta-tatataactttatttcaatcttttgatagtttcaatttgaatgg-aa |
7723681 |
T |
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| Q |
211 |
ttacagtcactatgcaatgcatgtgggatcagattcaagaaggaagagagaagagcaacttctgccgccggcacagcgacagcgccatctattggcgtaa |
310 |
Q |
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| T |
7723682 |
ttacagtcattatgcaatgcatgtgggatcagattcaagaaggaagagagaagagcaacttctgccgctggcacagcgacagcgccatctattggcgtaa |
7723781 |
T |
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| Q |
311 |
tggagtcag |
319 |
Q |
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| T |
7723782 |
tggagtcag |
7723790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 32956086 - 32956020
Alignment:
| Q |
200 |
ttgaatgggaattacagtcactatgcaatgcatgtgggatcagattcaagaaggaagagagaagagc |
266 |
Q |
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| T |
32956086 |
ttgaattgaaattgcagtcactatgcaatgcttgtgggattagatacaagaaggaagagagaagagc |
32956020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 32956410 - 32956322
Alignment:
| Q |
43 |
aacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgaggcccaaaggt |
131 |
Q |
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| T |
32956410 |
aacaatgattctcttcttgctcgtcgttgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggccctaaggt |
32956322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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