View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2790_high_9 (Length: 251)
Name: NF2790_high_9
Description: NF2790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2790_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 35853785 - 35854018
Alignment:
| Q |
1 |
gcatcagacaaagttcaa-gagacaaattgcaagagcgctaatgaaacaaacacatacnnnnnnngctgaaagactcagttaatacaagattggatcatt |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35853785 |
gcatcagacaaagttcaaagagacaaattgcaagagcgctaatgaaacaaacacatacaaaaaaagctgaaagactcagttaatacaagattggatcatt |
35853884 |
T |
|
| Q |
100 |
gaactccaaaagcaagggaggataaattaagccaaattgagccatgaagttaagaatgatttcttattcagtggaacacttctgtttgaactaggcttgg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35853885 |
gaactccaaaagcaagggaggataaattaagccaaattgagccatgaagttaagaatgatttcttattcagtggaacacttctgtttgaactaggcttgg |
35853984 |
T |
|
| Q |
200 |
gatggatggctcaactcattcaaccctacccata |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
35853985 |
gatggatggctcaactcattcaaccctacccata |
35854018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 81 - 221
Target Start/End: Original strand, 35858437 - 35858577
Alignment:
| Q |
81 |
aatacaagattggatcattgaactccaaaagcaagggaggataaattaagccaaattgagccatgaagttaagaatgatttcttattcagtggaacactt |
180 |
Q |
| |
|
|||| |||||||||||||||| ||||| |||| | ||||||||||||||| |||||||| ||||||||||||| |||||||| ||||||| ||| |||| |
|
|
| T |
35858437 |
aataaaagattggatcattgagctccacaagctacggaggataaattaagtaaaattgagtcatgaagttaagattgatttctaattcagttgaaaactt |
35858536 |
T |
|
| Q |
181 |
ctgtttgaactaggcttgggatggatggctcaactcattca |
221 |
Q |
| |
|
| ||||||| ||||| ||| |||||| | |||||||||||| |
|
|
| T |
35858537 |
cagtttgaaataggcctggcatggatagttcaactcattca |
35858577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 35727805 - 35727703
Alignment:
| Q |
69 |
aaagactcagttaatacaagattggatcattgaactccaaaagcaagggaggataaattaagccaaattgagccatgaagttaagaatgatttcttattc |
168 |
Q |
| |
|
||||||||| || |||||||||||| ||||||| |||||||| ||||| ||||||||||||||||| ||||| | |||||| ||||||||||||| |
|
|
| T |
35727805 |
aaagactcaatttatacaagattggctcattgagttccaaaagtcagggaacttaaattaagccaaattggaccatgcaattaagactgatttcttattc |
35727706 |
T |
|
| Q |
169 |
agt |
171 |
Q |
| |
|
||| |
|
|
| T |
35727705 |
agt |
35727703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 35748516 - 35748467
Alignment:
| Q |
1 |
gcatcagacaaagttcaagagacaaattgcaagagcgctaatgaaacaaa |
50 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35748516 |
gcatcaaacaaagttcaagagacaaattgcaagagcactaatgaaacaaa |
35748467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University