View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2790_low_13 (Length: 238)
Name: NF2790_low_13
Description: NF2790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2790_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 38276438 - 38276605
Alignment:
| Q |
18 |
gttttttgtatt-gttttccatattcatctttgctatgttctataagcaataacatcattcatagttagggctctgaggaatgcataggtaagaaagctt |
116 |
Q |
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| T |
38276438 |
gttttttgtatttgttttccatattcatctttgctatgttctataagcaataacatcattcatagttagggctctgaggaatgcataggtcagaaagctt |
38276537 |
T |
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| Q |
117 |
catgggaaatgaaaggttgctatcatgtgtttcaccatatttccaaagtagtgttgatattttaggat |
184 |
Q |
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| T |
38276538 |
catgggaaatgaaaggttgctatcatgtgtttcaccatatttccaaagtagtgttgatattttaggat |
38276605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 38277743 - 38277867
Alignment:
| Q |
114 |
cttcatgggaaatgaaaggttgctatcatgtgtttcaccatatttccaaagtagtgttgatattttaggatgcggtgagtgacatatttatatttatctt |
213 |
Q |
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| T |
38277743 |
cttcatgggaaatgaaaggttgccatcatgtgtttcaccatatttccaaactagtgttgatattttaggatgtggtgagtgacatatttatatttatctt |
38277842 |
T |
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| Q |
214 |
tgaattgttatttttattttccttt |
238 |
Q |
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| T |
38277843 |
tgaattgttatttttattttccttt |
38277867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 26572301 - 26572384
Alignment:
| Q |
94 |
ggaatgcataggtaagaaagcttcatgggaaatgaaaggttgctatcatgtgtttcaccatatttccaaagtagtgttgatatt |
177 |
Q |
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| T |
26572301 |
ggaatgcataggtctcaaagcttcatgggaaatgaaagattgctatcatgtgtttcattatatttccaaagtaatgttgatatt |
26572384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 26572414 - 26572450
Alignment:
| Q |
197 |
atatttatatttatctttgaattgttatttttatttt |
233 |
Q |
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| T |
26572414 |
atatttatatttatctttgaattgttattttgatttt |
26572450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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