View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2790_low_16 (Length: 227)
Name: NF2790_low_16
Description: NF2790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2790_low_16 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 8554285 - 8554506
Alignment:
| Q |
6 |
actttcacttcataaattaaagttttatttttaatgcttaggtttatgaggttgttcttcttattatggcaattttctggattgtccttttggttattaa |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8554285 |
actttcacttcataaattaaagttttatttttaatgcttaggtttatgaggttgttcttcttattatggaaattttctggattgtccttttggttattaa |
8554384 |
T |
|
| Q |
106 |
ataaaagatcatggatttgaatgcattgcaaagggaaagaaaacttgaaataatagtataaagtttttcatgtcaataacttaccctaaaactcttttcc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8554385 |
ataaaagatcatggatttgaatgcattgcaaagggaaagaaaacttgaaataatagtataaagtttttcatgtcaataacttaccctaaaactcttttcc |
8554484 |
T |
|
| Q |
206 |
atggggacagatccatatccat |
227 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8554485 |
atggggacagatccatatccat |
8554506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University