View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2790_low_2 (Length: 592)

Name: NF2790_low_2
Description: NF2790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2790_low_2
NF2790_low_2
[»] chr7 (17 HSPs)
chr7 (14-592)||(43029838-43030413)
chr7 (14-165)||(42800851-42801002)
chr7 (14-165)||(42835523-42835671)
chr7 (74-165)||(35070415-35070506)
chr7 (74-165)||(35096451-35096542)
chr7 (85-165)||(35079113-35079193)
chr7 (73-165)||(35093203-35093295)
chr7 (72-164)||(33864546-33864638)
chr7 (72-160)||(34150969-34151057)
chr7 (72-160)||(34176067-34176155)
chr7 (99-165)||(36741465-36741531)
chr7 (80-165)||(38288226-38288311)
chr7 (77-161)||(45582145-45582229)
chr7 (112-157)||(38155331-38155376)
chr7 (103-163)||(38283759-38283819)
chr7 (82-142)||(44958707-44958767)
chr7 (41-157)||(38185566-38185682)
[»] chr4 (1 HSPs)
chr4 (208-582)||(46528063-46528443)
[»] chr5 (1 HSPs)
chr5 (73-165)||(9666623-9666715)
[»] chr6 (6 HSPs)
chr6 (72-164)||(25570603-25570695)
chr6 (72-164)||(26005071-26005163)
chr6 (103-165)||(4161461-4161523)
chr6 (103-161)||(4223085-4223143)
chr6 (72-121)||(26105095-26105144)
chr6 (123-164)||(26123895-26123936)
[»] scaffold0176 (1 HSPs)
scaffold0176 (109-164)||(20474-20529)
[»] chr1 (1 HSPs)
chr1 (103-165)||(52214741-52214803)
[»] chr3 (1 HSPs)
chr3 (103-163)||(2220578-2220638)


Alignment Details
Target: chr7 (Bit Score: 494; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 14 - 592
Target Start/End: Original strand, 43029838 - 43030413
Alignment:
Q  14 cagagacactaatgatcgtgacagatactatataggtgctcatagttggattaattactgtggtggtggttgttggtttggagagaatgttattcacgag 113  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43029838 cagagacactaatgatcgtgacagatactatataggtgctcgtagatggattaattactgtggtggtggttgttggtttggagagaatgttattcacgag 43029937  T
Q  114 atgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgttcataaatccatttttggtaatggaaggaaaagagnnnnnnntcgttac 213  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||       |||||||    
T  43029938 atgcttaaagatgaagtaaatgaacaatgacagcttataattttatagtgttcataaatccatttttggtaatggaaggaaaagagaaaaaa-tcgttac 43030036  T
Q  214 ctcaaatgtccaatatgttaaattcacaactttttgtaatgcaaaagtttacaaagtcatacatgagtgatcccttgtaggttgtgatgttaatcctatt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43030037 ctcaaatgtccaatatgttaaattcacaactttttgtaatgcaaaagtttacaaagtcatacatgagtgatcccttgtaggttgtgatgttaatcctatt 43030136  T
Q  314 atcatttacttccttctaaaacttcctctatatgtaacttctactttcacacctctccagtctttcttaatctgcatgaatgataccacaaagatttcgt 413  Q
    ||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43030137 atcatgtacttccttctaaaacttcctctatatg--acttctactttcacacctcttcagtctttcttaatctgcatgaatgataccacaaagatttcgt 43030234  T
Q  414 ggtcagatagtgtttaacttttaaagatgatattatcgaactaaaaacaaagaattctagtttccatagagaaataaatttctaacggtctgcatttgac 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  43030235 ggtcagatagtgtttaacttttaaagatgatattatcgaactaaaaacaaaaaattctagtttccatagaaaaataaatttcttacggtctgcatttgac 43030334  T
Q  514 aatggctttgaggtcacatgttttcataaaatttgagctgcagtgtcaatcaaaaggagcggttctatagattagaaga 592  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  43030335 aatggctttgagggcacatgttttcataaaatttgagctgcagtgtcaatcaaaaggagcggctccatagattagaaga 43030413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 42800851 - 42801002
Alignment:
Q  14 cagagacactaatgatcgtgacagatactatataggtgctcatagttggattaattactgtggtggtggttgttggtttggagagaatgttattcacgag 113  Q
    |||||| |||| ||||||||||||||||||||||| ||||  ||| |||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||    
T  42800851 cagagatactactgatcgtgacagatactatatagatgctagtagatggattaatttctgcggtggtggttgttggattgaagagaatgttattcacgag 42800950  T
Q  114 atgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 165  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  42800951 atgcttaaagatgaagtaaatgaacaatgccaccttataattttgtaatgtt 42801002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 42835523 - 42835671
Alignment:
Q  14 cagagacactaatgatcgtgacagatactatataggtgctcatagttggattaattactgtggtggtggttgttggtttggagagaatgttattcacgag 113  Q
    ||||||||||| ||||||||||||||||||||||| ||||  ||| |||||||||| ||||||||||||||||||  |||||||||||   |||||||||    
T  42835523 cagagacactactgatcgtgacagatactatatagatgctagtagatggattaatttctgtggtggtggttgttgcattggagagaat---attcacgag 42835619  T
Q  114 atgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 165  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42835620 atgcttaaagatgaagtaaatgaacaatgccaccttataattttgtagtgtt 42835671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 35070506 - 35070415
Alignment:
Q  74 tggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 165  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35070506 tggtggttgtcgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 35070415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 35096542 - 35096451
Alignment:
Q  74 tggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 165  Q
    ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35096542 tggtggttgtcgttggtttgaagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 35096451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 35079193 - 35079113
Alignment:
Q  85 gttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 165  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35079193 gttggtttggagagaatgttattcatgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 35079113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 35093295 - 35093203
Alignment:
Q  73 gtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 165  Q
    |||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  35093295 gtggtggttgtcgttggtttggagagaatgttattcatgagatgcttatagatgaagtaaatgaacaatgtcagcttataattttgtagtgtt 35093203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 33864546 - 33864638
Alignment:
Q  72 tgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgt 164  Q
    |||||||||| ||||||||| ||| |||||||||||| |||||||||||| |||||||||||||||||||| |||||||| ||| ||||||||    
T  33864546 tgtggtggtgattgttggttaggaaagaatgttattcgcgagatgcttaaggatgaagtaaatgaacaatgtcagcttattattctgtagtgt 33864638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 34150969 - 34151057
Alignment:
Q  72 tgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgta 160  Q
    |||||||||  ||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34150969 tgtggtggtcattgttggttaggaaataatgttatttacgagatgcttaaagatgaagtaaatgaacaatgtcagcttataattttgta 34151057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 34176155 - 34176067
Alignment:
Q  72 tgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgta 160  Q
    |||||||||  ||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34176155 tgtggtggtcattgttggttaggaaataatgttatttacgagatgcttaaagatgaagtaaatgaacaatgtcagcttataattttgta 34176067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 36741531 - 36741465
Alignment:
Q  99 aatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 165  Q
    ||||||||| | |||||||||||||||||||||||| ||||||| || |||||||||||||||||||    
T  36741531 aatgttatttatgagatgcttaaagatgaagtaaataaacaatgtcaacttataattttgtagtgtt 36741465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 38288226 - 38288311
Alignment:
Q  80 tggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 165  Q
    |||||||||||||| | ||||| ||||||| || |||||||||||||||||||||||||| || ||  |||||||| |||||||||    
T  38288226 tggttgttggtttgaacagaatcttattcaagaaatgcttaaagatgaagtaaatgaacattgtcaatttataattctgtagtgtt 38288311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 45582145 - 45582229
Alignment:
Q  77 tggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtag 161  Q
    |||| ||||||||||||   | ||||||||||| |||||||| ||||| ||||||||||||| ||| || |||||||||||||||    
T  45582145 tggttgttgttggtttgtgcaaaatgttattcaggagatgctcaaagacgaagtaaatgaaccatgtcaacttataattttgtag 45582229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 38155376 - 38155331
Alignment:
Q  112 agatgcttaaagatgaagtaaatgaacaatgccagcttataatttt 157  Q
    |||||||||||||||||||| |||||||||| || |||||||||||    
T  38155376 agatgcttaaagatgaagtacatgaacaatgtcaacttataatttt 38155331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 38283819 - 38283759
Alignment:
Q  103 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 163  Q
    ||||||| || |||||| |||||||||| ||||||||||| |||||| || ||||||||||    
T  38283819 ttattcatgacatgcttcaagatgaagttaatgaacaatgtcagcttgtagttttgtagtg 38283759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 44958707 - 44958767
Alignment:
Q  82 gttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatg 142  Q
    ||||||||||||   | ||||||||||| ||||||||||||||| |||||||| |||||||    
T  44958707 gttgttggtttgagtataatgttattcaagagatgcttaaagataaagtaaatcaacaatg 44958767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 38185682 - 38185566
Alignment:
Q  41 ctatataggtgctcatagttggattaattactgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaa 140  Q
    ||||| ||||||| |||| |||| |||| |||  | || | |||||||||||| |  ||||| ||||||  ||||||||||||||||||||  | | |||    
T  38185682 ctatacaggtgctgatagatggactaatgactcagatgattgttgttggtttgaatggaatgatattcataagatgcttaaagatgaagtacttcaccaa 38185583  T
Q  141 tgccagcttataatttt 157  Q
    || || |||||||||||    
T  38185582 tgtcaacttataatttt 38185566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 208 - 582
Target Start/End: Complemental strand, 46528443 - 46528063
Alignment:
Q  208 cgttacctcaaatgtccaatatgttaaattcacaactttttgtaatgcaaaagtttacaaagtcatacatgagtgatcccttgtaggttgtgatgttaat 307  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| ||||| |||||  || |||||||||||||||||||||    
T  46528443 cgttacctcaaatgtccaatgtgttaaattcacaactttttgtaatgcaaaaaattacaaagccatacctgagt--tctcttgtaggttgtgatgttaat 46528346  T
Q  308 cctattatcatttacttccttctaaaacttcctctatatgtaacttctactttcacacctctccagtctttcttaatctgcatgaatgataccacaaaga 407  Q
    ||  ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||| ||||||||||||||    
T  46528345 ccagttatcctgtacttccttctaaaacttcctctatatgtaacttctactttcacacctttcaaggctttcttaatctgcttgagtgataccacaaaga 46528246  T
Q  408 tttcgtggtcagatagtgtttaacttttaaagatgatattatcgaactaaaaacaaagaattctagtttccatagagaaataaatttctaa--------c 499  Q
    |||| | ||| ||||||| |||| ||||  ||||||| ||||| ||||||||||| |||||||||||| ||||||| | || ||||||| |        |    
T  46528245 tttctttgtcggatagtgcttaatttttggagatgatgttatccaactaaaaacagagaattctagttgccatagaaatatgaatttcttaccttgatgc 46528146  T
Q  500 ggtctgcatttgacaatggctttgaggtcacatgttttcataaaatttgagctgcagtgtcaatcaaaaggagcggttctata 582  Q
    | ||||||| ||||||||||||||||  ||||| ||||| |||||||||||||||| ||||||||| | ||||||||||||||    
T  46528145 gatctgcatctgacaatggctttgagtgcacatcttttcctaaaatttgagctgcaatgtcaatcacagggagcggttctata 46528063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 9666623 - 9666715
Alignment:
Q  73 gtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 165  Q
    |||||||| || ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  9666623 gtggtggttgtcgttggtttggagagaatgttattcatgagatgtttaaagatgaagtaaatgaacaatgccaacttataattttgtagtgtt 9666715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 25570603 - 25570695
Alignment:
Q  72 tgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgt 164  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  25570603 tgtggtggtgattgttggttaggaaagaatgttattcacgagatgcttaaggatgaagtaaatgaacaatgtcagcttataattctgtagtgt 25570695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 26005071 - 26005163
Alignment:
Q  72 tgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgt 164  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  26005071 tgtggtggtgattgttggttaggaaagaatgttattcacgagatgcttaaggatgaagtaaatgaacaatgtcagcttataattctgtagtgt 26005163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 4161523 - 4161461
Alignment:
Q  103 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 165  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  4161523 ttattcatgaggtgcttaaagatgaagtagatgaacaatgccaacttataattttgtagtgtt 4161461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 4223143 - 4223085
Alignment:
Q  103 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtag 161  Q
    ||||||| ||| |||||| |||||||||| ||||||||||||| |||||||||||||||    
T  4223143 ttattcatgaggtgcttacagatgaagtagatgaacaatgccaacttataattttgtag 4223085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 26105095 - 26105144
Alignment:
Q  72 tgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaa 121  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||| ||||    
T  26105095 tgtggtggtgattgttggttaggaaagaatgttattcacgagatgtttaa 26105144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 26123895 - 26123936
Alignment:
Q  123 gatgaagtaaatgaacaatgccagcttataattttgtagtgt 164  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  26123895 gatgaagtaaatgaacaatgtcagcttataattctgtagtgt 26123936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 20529 - 20474
Alignment:
Q  109 acgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgt 164  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  20529 acgagatgcttaaggatgaagtaaatgaacaatgtcagcttataattttgtagtgt 20474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 52214803 - 52214741
Alignment:
Q  103 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 165  Q
    ||||||| ||| ||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  52214803 ttattcatgaggtgcttaaagatgaagtagatgaacaatcccaacttataattttgtagtgtt 52214741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 2220638 - 2220578
Alignment:
Q  103 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 163  Q
    ||||||| || |||||| |||||||||| ||||||||||| ||||||||| |||| |||||    
T  2220638 ttattcatgacatgcttcaagatgaagttaatgaacaatgtcagcttatagttttttagtg 2220578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University