View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2790_low_3 (Length: 574)
Name: NF2790_low_3
Description: NF2790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2790_low_3 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 264 - 571
Target Start/End: Complemental strand, 33811307 - 33811001
Alignment:
| Q |
264 |
tggctggaacccatcaattctccccctccagcccaagaggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactct |
363 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33811307 |
tggctggaaaccaacaattctccccctccagccaaag-ggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactct |
33811209 |
T |
|
| Q |
364 |
atcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaa |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811208 |
atcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaa |
33811109 |
T |
|
| Q |
464 |
tccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataact |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33811108 |
tccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaat |
33811009 |
T |
|
| Q |
564 |
ttcttgat |
571 |
Q |
| |
|
|||||||| |
|
|
| T |
33811008 |
ttcttgat |
33811001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 264 - 571
Target Start/End: Complemental strand, 33816225 - 33815919
Alignment:
| Q |
264 |
tggctggaacccatcaattctccccctccagcccaagaggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactct |
363 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33816225 |
tggctggaaaccaacaattctccccctccagccaaag-ggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactct |
33816127 |
T |
|
| Q |
364 |
atcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaa |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816126 |
atcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaa |
33816027 |
T |
|
| Q |
464 |
tccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataact |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33816026 |
tccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaat |
33815927 |
T |
|
| Q |
564 |
ttcttgat |
571 |
Q |
| |
|
|||||||| |
|
|
| T |
33815926 |
ttcttgat |
33815919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 33807923 - 33807820
Alignment:
| Q |
1 |
ctcaactctatgtgagtgaggattatgttgtggtgtggtgtgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| | | |||||||| ||||||||||||||||||| | |||||||| ||||| ||||||| |
|
|
| T |
33807923 |
ctcaactctatgtgagtgaggattgtgttgtggtgtg--tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgctt |
33807826 |
T |
|
| Q |
101 |
ggttct |
106 |
Q |
| |
|
|||||| |
|
|
| T |
33807825 |
ggttct |
33807820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 33811577 - 33811474
Alignment:
| Q |
1 |
ctcaactctatgtgagtgaggattatgttgtggtgtggtgtgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| | | |||||||| ||||||||||||||||||| | |||||||| ||||| ||||||| |
|
|
| T |
33811577 |
ctcaactctatgtgagtgaggattgtgttgtggtgtg--tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgctt |
33811480 |
T |
|
| Q |
101 |
ggttct |
106 |
Q |
| |
|
|||||| |
|
|
| T |
33811479 |
ggttct |
33811474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 33816495 - 33816392
Alignment:
| Q |
1 |
ctcaactctatgtgagtgaggattatgttgtggtgtggtgtgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| | | |||||||| ||||||||||||||||||| | |||||||| ||||| ||||||| |
|
|
| T |
33816495 |
ctcaactctatgtgagtgaggattgtgttgtggtgtg--tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgctt |
33816398 |
T |
|
| Q |
101 |
ggttct |
106 |
Q |
| |
|
|||||| |
|
|
| T |
33816397 |
ggttct |
33816392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 26 - 277
Target Start/End: Original strand, 31152242 - 31152492
Alignment:
| Q |
26 |
tgttgtggtgtggtgtgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgcttggttctcacattcaaccactatact |
125 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31152242 |
tgttgtggtgtgat-tgctttgctgaagctcttctctatttatagagagatttgaaccacaaacattgaatgcttggttctcacattcaaccactatact |
31152340 |
T |
|
| Q |
126 |
ccaccgtccttgacttttgtactaccatttgccatgctttcaaattgcttctgacacaaattgaagttaagcaccacaagctactttctataggcatgta |
225 |
Q |
| |
|
| ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31152341 |
caaccgtccttgacttttgaactaccatctgccgtgctttcaaattgcttctgacacaaattgaagttaagcaccgcaagctactttctataggcatgta |
31152440 |
T |
|
| Q |
226 |
ggagaagaaatttcaacatttctcatagtgccttactatggctggaacccat |
277 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
31152441 |
ggagaagaaatttcaacatctctcatagtgccttactatagctggaacccat |
31152492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 343 - 571
Target Start/End: Original strand, 22981829 - 22982057
Alignment:
| Q |
343 |
gcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtt |
442 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||| |||||||||||| |||||||| || ||||||||||||| |||||||| || || || || |
|
|
| T |
22981829 |
gcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatt |
22981928 |
T |
|
| Q |
443 |
tattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgact |
542 |
Q |
| |
|
|| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||||| ||||| ||||| |
|
|
| T |
22981929 |
tactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgact |
22982028 |
T |
|
| Q |
543 |
atcacaatagagaacataactttcttgat |
571 |
Q |
| |
|
|| |||||||||||||| |||| ||||| |
|
|
| T |
22982029 |
gtcgcaatagagaacatagcttttttgat |
22982057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 343 - 571
Target Start/End: Complemental strand, 23806579 - 23806351
Alignment:
| Q |
343 |
gcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtt |
442 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||| |||||||||||| |||||||| || ||||||||||||| |||||||| || || || || |
|
|
| T |
23806579 |
gcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatt |
23806480 |
T |
|
| Q |
443 |
tattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgact |
542 |
Q |
| |
|
|| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||||| ||||| ||||| |
|
|
| T |
23806479 |
tactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgact |
23806380 |
T |
|
| Q |
543 |
atcacaatagagaacataactttcttgat |
571 |
Q |
| |
|
|| |||||||||||||| |||| ||||| |
|
|
| T |
23806379 |
gtcgcaatagagaacatagcttttttgat |
23806351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 509
Target Start/End: Original strand, 1105112 - 1105201
Alignment:
| Q |
420 |
aattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgt |
509 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||| | || ||||||| || |||| |||||||||||| ||| |||||||||| |
|
|
| T |
1105112 |
aattttctctatttaaagcagtttattctctaacacgtcatgtattcaatgatttcttacattgatgtgttttgatcttaaatggtatgt |
1105201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 1105017 - 1105101
Alignment:
| Q |
304 |
aaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttg |
388 |
Q |
| |
|
||||||| ||||||||| |||||| |||||| || ||||||| | |||| |||| |||| ||||| ||||||||||||||||| |
|
|
| T |
1105017 |
aaactatacttagattaatttgggattgctgtcaagcctgcaattgctttataaaaatctaacttcttttttggtagagcttttg |
1105101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 317 - 571
Target Start/End: Original strand, 4836208 - 4836462
Alignment:
| Q |
317 |
attagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggt |
416 |
Q |
| |
|
||||||||||||||||| ||| || ||||||||||| |||||||||||||||||||| ||||| | |||||||||||| |||||||| || ||||| || |
|
|
| T |
4836208 |
attagtttggggttgctaccattccagcagcttgtttgcaaaactctatcttctctttcggtagcggttttgtcatcatgtctgctccattctcatttgt |
4836307 |
T |
|
| Q |
417 |
gtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattc |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836308 |
gtgaattttctctatttgcagcagtttattctctaacacatcacgtatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattc |
4836407 |
T |
|
| Q |
517 |
ttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
571 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836408 |
ttgctgaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
4836462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 316 - 494
Target Start/End: Original strand, 24379927 - 24380105
Alignment:
| Q |
316 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattgg |
415 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||| |||||||||||| || ||||| || | ||||| |
|
|
| T |
24379927 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttgatagaggttttgtcatcatgtcggctccattcttattgg |
24380026 |
T |
|
| Q |
416 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttga |
494 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
24380027 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcattgtgttttga |
24380105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 316 - 570
Target Start/End: Original strand, 54967873 - 54968127
Alignment:
| Q |
316 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattgg |
415 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54967873 |
gattaatttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttctcattgg |
54967972 |
T |
|
| Q |
416 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
515 |
Q |
| |
|
|||||| |||||||| || || || |||| | |||||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||| || || |
|
|
| T |
54967973 |
tgtgaactttctctactttcaacaatttactttccaacacatcacgaatccagtgatacctcacatcaatgtgttttgatctggagtggtatgttgagtt |
54968072 |
T |
|
| Q |
516 |
cttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttga |
570 |
Q |
| |
|
|||||| || |||||||| || ||||| || |||||||||||||||||||||||| |
|
|
| T |
54968073 |
cttgctgagatgaattgcgctctgactgtcgcaatagagaacataactttcttga |
54968127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 50603111 - 50602993
Alignment:
| Q |
1 |
ctcaactctatgtgagtgaggatt-----atgttgtggtgtggtgtgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaa |
95 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||| || |
|
|
| T |
50603111 |
ctcaactctgtgtgagtgaggattgtgctatgttgtggtgtgtt-tgctttgctgaagctcttctctatttatagagagaaatgaaccgtaagcattaaa |
50603013 |
T |
|
| Q |
96 |
tgcttggttctcacattcaa |
115 |
Q |
| |
|
|||||||||| ||| ||||| |
|
|
| T |
50603012 |
tgcttggttcacactttcaa |
50602993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 316 - 571
Target Start/End: Complemental strand, 2274 - 2019
Alignment:
| Q |
316 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattgg |
415 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||| ||| |||||||| |||||||| || ||||||| |
|
|
| T |
2274 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactcaatcttctcttttggtagaggtttggtcatcatgtctgctccattctcattgg |
2175 |
T |
|
| Q |
416 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
515 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| || |||||||| || || || ||||| || || |
|
|
| T |
2174 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcaatatgttttgatctggagtgatatgttgagtt |
2075 |
T |
|
| Q |
516 |
cttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
571 |
Q |
| |
|
|||||| || ||||| || |||||||| || |||||||||||||| |||||||||| |
|
|
| T |
2074 |
cttgctgagatgaatcgcgctttgactgtcgcaatagagaacatagctttcttgat |
2019 |
T |
|
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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 472 - 571
Target Start/End: Original strand, 25003630 - 25003727
Alignment:
| Q |
472 |
tacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
571 |
Q |
| |
|
||||||||||| |||||||| |||||||| || |||||||| || || || |||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
25003630 |
tacctcacatctatgtgttt-gaccttgattg-tatgtcgagttatttctgaggtgaattgcactttgactatcacaatagggaacataactttgttgat |
25003727 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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