View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2790_low_8 (Length: 310)
Name: NF2790_low_8
Description: NF2790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2790_low_8 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 35853481 - 35853794
Alignment:
| Q |
1 |
ataatactatgacttgcggagtaatcctggcacaatagatagggaatccagtgtaaaacttcaaaggtcctcctg-----ccttaaatgtttcgacagca |
95 |
Q |
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| T |
35853481 |
ataatactatgacttgcggagtaatcctggcacaatagatagggaatccagtgtaaaacttcaaaggtcctcctgtcctgccttaaatgtttcgacagca |
35853580 |
T |
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| Q |
96 |
cagtcaagaaagctagtgtatggataatttcccttcagcgtcaggttgcatcttgttaatttgaattatcacatattcaaatggtaaactacaagcagct |
195 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35853581 |
cagtcaagaaagctagtgtatggata-tttcccttcagcgtcaggttgcatcttgttaatttgaattatcacatattcaaatggtaaactacaagcagct |
35853679 |
T |
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| Q |
196 |
gcgaaaacaccagacacaaaaattgcacctgaacaggatattcaggtgcaaattagcgctcgtaaaaggaagaaatcttggaatgcaaatgaaatgaatc |
295 |
Q |
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| T |
35853680 |
gcggaaacaccagacacaaaaattgcacctgaacaggatattcaggtgcaaattagcgctcgtaaaaggaagaaatcttggaatgcaaatgaaatgaatc |
35853779 |
T |
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| Q |
296 |
aaagagcatcagaca |
310 |
Q |
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||||||||||||||| |
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| T |
35853780 |
aaagagcatcagaca |
35853794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 35748791 - 35748585
Alignment:
| Q |
23 |
aatcctggcacaatagatagggaatccagtgtaaaacttcaaaggtcctcctgccttaaatgtttcgacagcacagtcaagaaagctagtgtatggataa |
122 |
Q |
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| T |
35748791 |
aatcctgacacaatagagagggaatccagtgtaaaatttcaaaattcctcctgctttgtaggttttgacagcgcaatcaagaaagccggtgtatggata- |
35748693 |
T |
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| Q |
123 |
tttcccttcagcgtcaggttgcatcttgttaatttgaattatcacatattcaaatggtaaactacaagcagctgcgaaaacaccagacacaaaaattgca |
222 |
Q |
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|||||||||||| ||||||||||| || | ||| ||||| ||||||||||||| ||||||||| ||||||||||| ||| | ||| |||||||||||| |
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| T |
35748692 |
tttcccttcagcatcaggttgcatattctgaatctgaatcatcacatattcaactggtaaactgcaagcagctgcataaataatagatacaaaaattgca |
35748593 |
T |
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| Q |
223 |
cctgaaca |
230 |
Q |
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|||||||| |
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| T |
35748592 |
cctgaaca |
35748585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 35858086 - 35858259
Alignment:
| Q |
23 |
aatcctggcacaatagatagggaatccagtgtaaaacttcaaaggtcctcctgccttaaatgtttcgacagcacagtcaagaaagctagtgtatggataa |
122 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||| | | |||| |||||||||||||| | ||| ||||||||||| | |
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| T |
35858086 |
aatcctggcacaatagacggagaatccagtgtaaaacttcaaaggtcctcctgctatgagagttttgacagcacagtcaacatagccagtgtatggat-a |
35858184 |
T |
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| Q |
123 |
tttcccttcagcgtcaggttgcatcttgttaatttgaattatcacatattcaaatggtaaactacaagcagctgc |
197 |
Q |
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| T |
35858185 |
tttccctttgtcatcaggttgcatcttcttaatttcaatcatcacatattcaaatggtaaacagcaaacagctgc |
35858259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 35729356 - 35729138
Alignment:
| Q |
9 |
atgacttgcggagtaatcctggcacaatagatagggaatccagtgtaaaacttcaaaggtcctcctgccttaaatgtttcgacagcacagtcaagaaagc |
108 |
Q |
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||||| || |||| |||||| |||| |||| |||||||||||||||||| || || ||||||||||| || || |||| ||| |||||||||||| | | |
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| T |
35729356 |
atgacgtggggagcaatcctaacacagtagacagggaatccagtgtaaaatttgaagggtcctcctgctttgaaggttttgacggcacagtcaagagaac |
35729257 |
T |
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| Q |
109 |
tagtgtatggataatttcccttcagcgtcaggttgcatcttgttaatttgaattatcacatattcaaatggtaaactacaagcagctgcgaaaacaccag |
208 |
Q |
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| T |
35729256 |
cagtgtatgggt-attttccttcagcatcaggttgcatcttctgaatctgtgtcttcacataatcaaatggcaaactgcaagctgctgcgaaaaatccag |
35729158 |
T |
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| Q |
209 |
acacaaaaattgcacctgaa |
228 |
Q |
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| T |
35729157 |
atacactacttgcacctgaa |
35729138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 35759881 - 35759985
Alignment:
| Q |
23 |
aatcctggcacaatagatagggaatccagtgtaaaacttcaaaggtcctcctgccttaaatgtttcgacagcacagtcaagaaagctagtgtatggataa |
122 |
Q |
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|||| |||||||| || || ||||||||| |||| || || ||||||||||| | || |||| |||||||||||||||| ||| ||||||||||| |
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| T |
35759881 |
aatcttggcacaaatgagagagaatccagtaaaaaaattgaatggtcctcctgcttggaaggttttgacagcacagtcaagatagccggtgtatggatat |
35759980 |
T |
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| Q |
123 |
tttcc |
127 |
Q |
| |
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||||| |
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| T |
35759981 |
tttcc |
35759985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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