View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2791_low_10 (Length: 243)
Name: NF2791_low_10
Description: NF2791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2791_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 9394141 - 9394358
Alignment:
| Q |
9 |
tgctaataaatcatgtcaatgataatttataaaattaaaatgattttctatttccnnnnnnn-gtctttctttgaattagcgaaaatatggttaaaacct |
107 |
Q |
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| T |
9394141 |
tgctaataaatcatgtcaatgataatttataaaattaaaatgattttctatttccttttttttgtctttctttgaattagcgaaaatatggttaaaacct |
9394240 |
T |
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| Q |
108 |
aagtacatgatttatgtacaagtacaaaaaagaaatcttccaatccaaatagacacaaataaaggatgaagtttcaaaaccgaatctaagtaaacaagaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9394241 |
aagtacatgatttatgtacaagtacaaaaaagaaatcttccaatccaaatagacacaaataaaggatgaagtttcaaaaccgaatcttagtaaacaagaa |
9394340 |
T |
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| Q |
208 |
acaaagaagacagatcaa |
225 |
Q |
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|||||||||||||||||| |
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| T |
9394341 |
acaaagaagacagatcaa |
9394358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 9405664 - 9405701
Alignment:
| Q |
144 |
cttccaatccaaatagacacaaataaaggatgaagttt |
181 |
Q |
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| T |
9405664 |
cttccaatcctaatagacacaaataaaggatgaagttt |
9405701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 9580208 - 9580161
Alignment:
| Q |
12 |
taataaatcatgtcaatgataatttataaaattaaaatgattttctat |
59 |
Q |
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| T |
9580208 |
taataaaccatgtcgaggaaaatttataaaattaaaatgattttctat |
9580161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 9334665 - 9334722
Alignment:
| Q |
165 |
aataaaggatgaagtttcaaaaccgaatctaagtaaacaagaaacaaagaagacagat |
222 |
Q |
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| T |
9334665 |
aataaaggatgaactatcaaaacctaatcaaagtaaacgacaaacaaagaggacagat |
9334722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 9170143 - 9170180
Alignment:
| Q |
181 |
tcaaaaccgaatctaagtaaacaagaaacaaagaagac |
218 |
Q |
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| T |
9170143 |
tcaaaacctaatctaagtaaacaagaaacgaagaagac |
9170180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 15038698 - 15038762
Alignment:
| Q |
151 |
tccaaatagacacaaataaaggatgaagtttcaaaaccgaatctaagtaaacaagaaacaaagaa |
215 |
Q |
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|||||||||| ||||| |||||||||| | || |||| ||||||| |||||||||||| ||||| |
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| T |
15038698 |
tccaaatagatacaaacaaaggatgaactatctgaacctaatctaactaaacaagaaaccaagaa |
15038762 |
T |
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