View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2791_low_3 (Length: 307)
Name: NF2791_low_3
Description: NF2791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2791_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 30921250 - 30920988
Alignment:
| Q |
17 |
ttattaactaaggcaaagctaaagagaccaatacatgtacatattccattagttgtctcacatcaatagatgtcttaagaaattcttgaatgactcactt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30921250 |
ttattaactaaggcaaagctaaagagaccaatacatgtacatattccattagttgtct-----------------taagaaattcttgaatgactcactt |
30921168 |
T |
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| Q |
117 |
gaccaaaagaagaaagaaattcttgaatgatgagagacctgtttgctgttaggtggcataaaaacgtgcaagatatactataatgataccttaagattcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30921167 |
gaccaaaagaagaaagaaattcttgaatgatgagagacctgtttgctgttaggtggcataaaaacgtgcaagatatactataatgataccttaagattcc |
30921068 |
T |
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| Q |
217 |
cccatacacatccatgattaataaaaaggaaatttgtcttaagattaaaagttaaacacttctcaatgagggacattcat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30921067 |
cccatacacatccatgattaataaaaaggaaatttgtcttaagattaaaagttaaacacttctcaatgagggacattcat |
30920988 |
T |
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