View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2791_low_4 (Length: 307)
Name: NF2791_low_4
Description: NF2791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2791_low_4 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 709 - 991
Alignment:
| Q |
18 |
aattgctcaaaaaaggttcaatgaagtgtagttattgcaagggaaaaggccataacaaacgtagttgtccaagtttaaaacatggaaggtatcttttaac |
117 |
Q |
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| T |
709 |
aattgctcaaaaaaggttcaatgaagtgtagttattgcaagggaaaaggccataacaaacgtagttgtccaagtttaaaacatggaaggtatcttttaac |
808 |
T |
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| Q |
118 |
tacatgttacaagtaattatgcaattagcttgaatttttcattttaccatgttaagttgattcagtgacaaaccaatgtcttttaggtgcgatattatca |
217 |
Q |
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| T |
809 |
tacatgttacaagtaattatgcaattagcttgaatttttcattttaccatgttaagttgattcagtgacaaaccaatgtcttttaggtgtgatattatca |
908 |
T |
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| Q |
218 |
atggtcagcgttcaaattccagtgttaaagcttctagttctagtttggttgtttaagaggtattggtattattattttcttgg |
300 |
Q |
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| T |
909 |
atggtcagcgttcaaattccagtgttaaagcttctagttctagtttggttgattaagaggtattggtattattattttgttgg |
991 |
T |
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Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 51167876 - 51168088
Alignment:
| Q |
44 |
tgtagttattgcaagggaaaaggccataacaaacgtagttgtccaagtttaaaacatggaaggtatcttttaactacatgttacaagtaattatgcaatt |
143 |
Q |
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| T |
51167876 |
tgtagttattgcaatggaaaaggccacaacaaacgtagatgtccaagtttaaaacatggaaggtatcttaaaattacatgttacaagtaattgtgcagtt |
51167975 |
T |
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| Q |
144 |
agcttgaatttttcattttaccatgttaagttgattcagtgacaaaccaatgtcttttaggtgcgatattatcaatggtcagcgttcaaattccagtgtt |
243 |
Q |
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| T |
51167976 |
aatttgaatttttcattttaccatgccaagtttattcagttacaaaccaatgtcctttaggtgtgatatcatcaatggtcaactttcaaattccaatgtt |
51168075 |
T |
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| Q |
244 |
aaagcttctagtt |
256 |
Q |
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| T |
51168076 |
aaagcttctagtt |
51168088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 65878 - 66060
Alignment:
| Q |
44 |
tgtagttattgcaagggaaaa-ggccataacaaacgtagttgtccaagtttaaaacatggaaggtatcttttaact-acatgttacaagtaattatgcaa |
141 |
Q |
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|||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| || | ||||||||||||||| | |||| |
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| T |
65878 |
tgtagttattgcaattgaaaaaggccacaacaaacgtagatgtccaagtttaaaacatggaaggtatcttaaaatttacatgttacaagtaactgtgcag |
65977 |
T |
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| Q |
142 |
ttagcttgaatttttcattttaccatgttaagttgattcagtgacaaaccaatgtcttttaggtgcgatattatcaatggtca |
224 |
Q |
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| T |
65978 |
ttaatttgaatttttcattttaccatgccaagtttattcaattacaaaccaatgtcttttaggtgtgatatcatcaatggtca |
66060 |
T |
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