View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2792-Insertion-10 (Length: 646)

Name: NF2792-Insertion-10
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2792-Insertion-10
NF2792-Insertion-10
[»] chr3 (6 HSPs)
chr3 (140-630)||(26283074-26283563)
chr3 (8-63)||(40514315-40514370)
chr3 (8-73)||(20857435-20857498)
chr3 (493-553)||(2133603-2133664)
chr3 (500-553)||(35420499-35420552)
chr3 (500-528)||(22328-22356)
[»] chr7 (7 HSPs)
chr7 (158-289)||(36783487-36783618)
chr7 (8-63)||(35213109-35213164)
chr7 (17-72)||(36031566-36031622)
chr7 (8-73)||(26855190-26855255)
chr7 (211-294)||(36783626-36783709)
chr7 (8-63)||(38489087-38489142)
chr7 (500-553)||(5418304-5418358)
[»] chr1 (9 HSPs)
chr1 (8-73)||(13868413-13868479)
chr1 (8-63)||(45794907-45794962)
chr1 (8-73)||(5808237-5808303)
chr1 (8-73)||(34352500-34352566)
chr1 (8-63)||(33150470-33150525)
chr1 (8-69)||(26510968-26511029)
chr1 (8-63)||(52028160-52028215)
chr1 (500-528)||(21519180-21519208)
chr1 (502-557)||(50806893-50806949)
[»] chr6 (3 HSPs)
chr6 (8-63)||(14320730-14320785)
chr6 (8-73)||(14687605-14687670)
chr6 (500-528)||(579674-579702)
[»] chr5 (7 HSPs)
chr5 (180-306)||(37083674-37083803)
chr5 (8-63)||(35100982-35101037)
chr5 (8-73)||(5100235-5100300)
chr5 (8-63)||(979697-979752)
chr5 (8-63)||(21368525-21368579)
chr5 (501-553)||(2090643-2090696)
chr5 (500-528)||(36806722-36806750)
[»] chr4 (5 HSPs)
chr4 (8-63)||(20543561-20543616)
chr4 (8-73)||(43517328-43517394)
chr4 (502-557)||(50471753-50471809)
chr4 (500-553)||(25575054-25575108)
chr4 (502-555)||(49738550-49738604)
[»] chr2 (5 HSPs)
chr2 (8-63)||(32623836-32623891)
chr2 (8-73)||(144622-144687)
chr2 (500-554)||(33393338-33393393)
chr2 (8-73)||(11195827-11195893)
chr2 (500-528)||(42549835-42549863)
[»] chr8 (6 HSPs)
chr8 (8-58)||(6244624-6244674)
chr8 (8-73)||(9510271-9510337)
chr8 (500-553)||(32276915-32276969)
chr8 (500-528)||(8255529-8255557)
chr8 (500-528)||(16921475-16921503)
chr8 (500-528)||(36447923-36447951)
[»] scaffold0570 (1 HSPs)
scaffold0570 (500-553)||(946-1000)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 140 - 630
Target Start/End: Original strand, 26283074 - 26283563
Alignment:
Q  140 cttttacttaaatgtaattttaaaacaacacaaagaaaataaaaacaagtgataatcttttgtagatctaaagatatagtaaatgtcaaaataagacaaa 239  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26283074 cttttacttaaatgtaattt-aaaacaacacagagaaaataaaaacaagtgataatgttttgtagatctaaagatatagtaaatgtcaaaataagacaaa 26283172  T
Q  240 acacatctatgaaataagtgaagatattttgatttggttgtttctattaatttttgaaaaataaacttatatttggagtgattaaatatatattactgta 339  Q
    ||| ||||||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||||  |||| | |||||||||||||||||||||||||    
T  26283173 acaaatctatgaaataagtgatgatcttttgatttgattgtttctattaagttttgaaaaataaac--atatctagagtgattaaatatatattactgta 26283270  T
Q  340 gtagctaaaggtaaaacatacttaattattcaaat--nnnnnnnttgaggtggccaaagctaccacattgatatgggtagcaacacccttggacactaat 437  Q
    |||||||||| ||||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  26283271 gtagctaaagctaaaacatacttaattattcaaataaaaaaagtttgaggtggccaaagctaccacattgctatgggtagctacacccttggacactaat 26283370  T
Q  438 taagatgcacacgcaatgccaaataaagaatacaaaatgaaaaacctatttttgttttgtttcaacaacaacaaccaagctttatcccactctatggggt 537  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  || |||    
T  26283371 taagatgcacgagcaatgctaaataaagaatacaaaatgaaaaacctatttttgttttgtttcaacaacaacaaccaagctttatcttactcagtgaggt 26283470  T
Q  538 cgttacatggatcaaacaaccaagccnnnnnnngttttgttt-aagggtggttatatttaaacatcttaatttctcaccatacattttaacatc 630  Q
    || ||||| |||||||||||||||||       ||||||||| ||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  26283471 cgctacat-gatcaaacaaccaagcctttttttgttttgtttcaagggtgattatatttagacattttaatttctcaccatacattttaacatc 26283563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 40514370 - 40514315
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa 63  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  40514370 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtactaaa 40514315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 20857435 - 20857498
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||||||||||| |||   ||||||| |||||||||||||||||||| | |||||||||||||    
T  20857435 aaaaatgggatatattaaca---gcagtgaaacacctaagtacaagatgtactaaaagtgtcacccc 20857498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 553
Target Start/End: Original strand, 2133603 - 2133664
Alignment:
Q  493 tttgtttcaacaacaacaaccaagctttatcccactctatggggtcg-ttacatggatcaaa 553  Q
    |||||| |||||||||||||||||| ||||||||||   ||||||||  |||||||||||||    
T  2133603 tttgttacaacaacaacaaccaagccttatcccactaagtggggtcgagtacatggatcaaa 2133664  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 35420552 - 35420499
Alignment:
Q  500 caacaacaacaaccaagctttatcccactctatggggtcgttacatggatcaaa 553  Q
    |||||| ||||||||||| ||||||||||  ||||||||| |||||||| ||||    
T  35420552 caacaataacaaccaagccttatcccactaaatggggtcgctacatggaccaaa 35420499  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 528
Target Start/End: Complemental strand, 22356 - 22328
Alignment:
Q  500 caacaacaacaaccaagctttatcccact 528  Q
    |||||||||||||||||||||||||||||    
T  22356 caacaacaacaaccaagctttatcccact 22328  T

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Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 158 - 289
Target Start/End: Original strand, 36783487 - 36783618
Alignment:
Q  158 tttaaaacaacacaaagaaaataaaaacaagtgataatcttttgtag-atctaaagatatagtaaatgtcaaaataagacaaaacacatctatgaaataa 256  Q
    |||||||| |||||  |||||||||| | |||||||||||||| ||| | |||||||||||||||  |||||||||||| |||| | |||||||||||||    
T  36783487 tttaaaacgacacattgaaaataaaa-ctagtgataatcttttctagtagctaaagatatagtaagggtcaaaataagaaaaaataaatctatgaaataa 36783585  T
Q  257 gtgaagatattttgatttggttgtttctattaa 289  Q
    ||||  || ||||||||||||| |||| |||||    
T  36783586 gtgataatcttttgatttggttatttccattaa 36783618  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 35213109 - 35213164
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa 63  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  35213109 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtactaaa 35213164  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 36031566 - 36031622
Alignment:
Q  17 atatatttacaacggcagtgagacacctaagtacaagatgtatt-aaagtgtcaccc 72  Q
    ||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  36031566 atatattaacaacggcagtgaaacacctaagtacaagatgtattaaaagtgtcaccc 36031622  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 26855190 - 26855255
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||| ||||||| ||| ||||||||| |||||||||||||||||||| | |||||||||||||    
T  26855190 aaaaatggaatatattaacagcggcagtga-acacctaagtacaagatgtactaaaagtgtcacccc 26855255  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 36783626 - 36783709
Alignment:
Q  211 agatatagtaaatgtcaaaataagacaaaacacatctatgaaataagtgaagatattttgatttggttgtttctattaattttt 294  Q
    |||||||||||  || ||||||||| |||| | |||||||||||||||||  ||  |||||||||||| |||| ||||| ||||    
T  36783626 agatatagtaagggttaaaataagataaaataaatctatgaaataagtgataatcctttgatttggttatttccattaactttt 36783709  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 38489142 - 38489087
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa 63  Q
    |||||||| ||||| | ||||||||||||| |||||| | ||||||||||||||||    
T  38489142 aaaaatggtatataataacaacggcagtgaaacaccttaatacaagatgtattaaa 38489087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 5418358 - 5418304
Alignment:
Q  500 caacaacaacaaccaagctttatcccactctatggggtcg-ttacatggatcaaa 553  Q
    |||||||||||||||||| ||||||||||  |||||||||  |||||||||||||    
T  5418358 caacaacaacaaccaagccttatcccactaaatggggtcgactacatggatcaaa 5418304  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 13868479 - 13868413
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtatt-aaagtgtcacccc 73  Q
    ||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  13868479 aaaaatgagatatattaacaacggcagtgaaacacctaagtacaagatgtattaaaagtgtcacccc 13868413  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 45794907 - 45794962
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa 63  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  45794907 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtactaaa 45794962  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 5808237 - 5808303
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||    
T  5808237 aaaaatggaatatattaacaacggcagtgagtcacctaagtacaagatgtactaaaagtgtcacccc 5808303  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 34352500 - 34352566
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||| ||||||  ||||||||||||| |||||||||||||||||||| | |||||||||||||    
T  34352500 aaaaatggaatatatcaacaacggcagtgaaacacctaagtacaagatgtactaaaagtgtcacccc 34352566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 33150470 - 33150525
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa 63  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||| ||||| ||||    
T  33150470 aaaaatggaatatattaacaacggcagtgaaacacctaagtacaaaatgtagtaaa 33150525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 26511029 - 26510968
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaagtgtca 69  Q
    |||||||| ||||||| | ||||| |||||  ||||||||||||||||||| ||||||||||    
T  26511029 aaaaatggaatatattaataacggtagtgaaccacctaagtacaagatgtactaaagtgtca 26510968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 52028160 - 52028215
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa 63  Q
    |||||||| ||||||| || || ||||||| ||||||||||| |||||||||||||    
T  52028160 aaaaatggaatatattaacgacagcagtgaaacacctaagtataagatgtattaaa 52028215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 528
Target Start/End: Complemental strand, 21519208 - 21519180
Alignment:
Q  500 caacaacaacaaccaagctttatcccact 528  Q
    |||||||||||||||||||||||||||||    
T  21519208 caacaacaacaaccaagctttatcccact 21519180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 50806949 - 50806893
Alignment:
Q  502 acaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaacaac 557  Q
    |||||||||||||||| |||| |||||  |||||||| |||||||| ||||||||||    
T  50806949 acaacaacaaccaagccttattccactaaatggggtcggttacatgaatcaaacaac 50806893  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 14320785 - 14320730
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa 63  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  14320785 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtactaaa 14320730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 14687670 - 14687605
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa-gtgtcacccc 73  Q
    |||||||| ||||||| ||||||||||||| |  ||||||||||||||||| |||| ||||||||||    
T  14687670 aaaaatggaatatattaacaacggcagtga-atgcctaagtacaagatgtactaaaggtgtcacccc 14687605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 528
Target Start/End: Complemental strand, 579702 - 579674
Alignment:
Q  500 caacaacaacaaccaagctttatcccact 528  Q
    |||||||||||||||||||||||||||||    
T  579702 caacaacaacaaccaagctttatcccact 579674  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 180 - 306
Target Start/End: Complemental strand, 37083803 - 37083674
Alignment:
Q  180 aaaaacaagtgataatcttttgtag-atctaaaga--tatagtaaatgtcaaaataagacaaaacacatctatgaaataagtgaagatattttgatttgg 276  Q
    ||||| ||||||||||||||||||| | | ||| |  ||||||||  ||||||||| ||||||| | ||| |||||||||||||  |  |||||||||||    
T  37083803 aaaaaaaagtgataatcttttgtagtagcaaaaaacatatagtaagggtcaaaatatgacaaaataaatcaatgaaataagtgataaccttttgatttgg 37083704  T
Q  277 ttgtttctattaatttttgaaaaataaact 306  Q
    || |||||||||| |||||| |||||||||    
T  37083703 ttatttctattaaattttgacaaataaact 37083674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 35100982 - 35101037
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa 63  Q
    |||||||| ||||||| |||||||| |||| |||||||||||||||||||| ||||    
T  35100982 aaaaatggaatatattaacaacggcggtgaaacacctaagtacaagatgtactaaa 35101037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 5100300 - 5100235
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa-gtgtcacccc 73  Q
    |||||||| ||||||| ||||||||||||| || ||||||||||||||||| |||| ||||||||||    
T  5100300 aaaaatggaatatattaacaacggcagtga-acgcctaagtacaagatgtactaaaggtgtcacccc 5100235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 979752 - 979697
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa 63  Q
    |||||||| ||||||| |||| |||||||| ||| |||||||||||||||| ||||    
T  979752 aaaaatggaatatattaacaatggcagtgaaacatctaagtacaagatgtactaaa 979697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 21368579 - 21368525
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa 63  Q
    |||||||| ||||||| |||||||||| || |||||||||||||||||||| ||||    
T  21368579 aaaaatggaatatattaacaacggcagcga-acacctaagtacaagatgtactaaa 21368525  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 553
Target Start/End: Complemental strand, 2090696 - 2090643
Alignment:
Q  501 aacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaa 553  Q
    |||||||||||| |||| ||||||||||| |||||||| | |||||||||||||    
T  2090696 aacaacaacaacaaagccttatcccactcaatggggtcgggtacatggatcaaa 2090643  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 528
Target Start/End: Complemental strand, 36806750 - 36806722
Alignment:
Q  500 caacaacaacaaccaagctttatcccact 528  Q
    |||||||||||||||||||||||||||||    
T  36806750 caacaacaacaaccaagctttatcccact 36806722  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 20543561 - 20543616
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa 63  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  20543561 aaaaatggaatatattaacaacggcagtgaaacacctaagtacaagatgtactaaa 20543616  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 43517394 - 43517328
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||| ||||||| ||||| ||||||| |||||||||||||||||||| | |||||||||||||    
T  43517394 aaaaatggaatatattaacaacagcagtgaaacacctaagtacaagatgtactaaaagtgtcacccc 43517328  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 50471809 - 50471753
Alignment:
Q  502 acaacaacaaccaagctttatcccactctatggggtcg-ttacatggatcaaacaac 557  Q
    |||||||||||||||| ||||||||||   |||||||| ||||||||||||||||||    
T  50471809 acaacaacaaccaagcgttatcccactaagtggggtcgattacatggatcaaacaac 50471753  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 25575108 - 25575054
Alignment:
Q  500 caacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaa 553  Q
    |||||||||||||||||| ||||||||||  |||||||| | |||||||||||||    
T  25575108 caacaacaacaaccaagccttatcccactaaatggggtctgctacatggatcaaa 25575054  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 555
Target Start/End: Original strand, 49738550 - 49738604
Alignment:
Q  502 acaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaaca 555  Q
    |||||||||||||||| ||||||||||  |||||||| | |||||||||||||||    
T  49738550 acaacaacaaccaagccttatcccactaaatggggtcggctacatggatcaaaca 49738604  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 32623836 - 32623891
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgtattaaa 63  Q
    |||||||| ||||||| ||||||||||| | |||||||||||||||||||| ||||    
T  32623836 aaaaatggaatatattaacaacggcagtaaaacacctaagtacaagatgtactaaa 32623891  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 144687 - 144622
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||| ||||||| ||||||||||||| ||| |||||||||||||||| | |||||||||||||    
T  144687 aaaaatggaatatattaacaacggcagtga-acatctaagtacaagatgtactaaaagtgtcacccc 144622  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 554
Target Start/End: Complemental strand, 33393393 - 33393338
Alignment:
Q  500 caacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaac 554  Q
    ||||||||||||||||||||||||||| |   ||||||| ||||||||||||||||    
T  33393393 caacaacaacaaccaagctttatcccagtaagtggggtcggttacatggatcaaac 33393338  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 11195827 - 11195893
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||| ||||||| ||||||| || || ||||||||||| |||||||| | |||||||||||||    
T  11195827 aaaaatggaatatattaacaacggtagggaaacacctaagtataagatgtactaaaagtgtcacccc 11195893  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 528
Target Start/End: Original strand, 42549835 - 42549863
Alignment:
Q  500 caacaacaacaaccaagctttatcccact 528  Q
    |||||||||||||||||||||||||||||    
T  42549835 caacaacaacaaccaagctttatcccact 42549863  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 6244624 - 6244674
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgta 58  Q
    |||||| | ||||||| |||||||||||||| |||||||||||||||||||    
T  6244624 aaaaattgaatatattaacaacggcagtgagtcacctaagtacaagatgta 6244674  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 9510271 - 9510337
Alignment:
Q  8 aaaaatgggatatatttacaacggcagtgagacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||  ||||||| |||||||||||||| ||||||| ||||||||||| | |||||||||||||    
T  9510271 aaaaatgaaatatattaacaacggcagtgagtcacctaaatacaagatgtactaaaagtgtcacccc 9510337  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 32276969 - 32276915
Alignment:
Q  500 caacaacaacaaccaagctttatcccactctatggggtcgt-tacatggatcaaa 553  Q
    |||||||||||||||||||||||||||||   |||| |||| |||||||||||||    
T  32276969 caacaacaacaaccaagctttatcccactaagtgggttcgtctacatggatcaaa 32276915  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 528
Target Start/End: Original strand, 8255529 - 8255557
Alignment:
Q  500 caacaacaacaaccaagctttatcccact 528  Q
    |||||||||||||||||||||||||||||    
T  8255529 caacaacaacaaccaagctttatcccact 8255557  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 528
Target Start/End: Complemental strand, 16921503 - 16921475
Alignment:
Q  500 caacaacaacaaccaagctttatcccact 528  Q
    |||||||||||||||||||||||||||||    
T  16921503 caacaacaacaaccaagctttatcccact 16921475  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 528
Target Start/End: Complemental strand, 36447951 - 36447923
Alignment:
Q  500 caacaacaacaaccaagctttatcccact 528  Q
    |||||||||||||||||||||||||||||    
T  36447951 caacaacaacaaccaagctttatcccact 36447923  T

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Target: scaffold0570 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 553
Target Start/End: Original strand, 946 - 1000
Alignment:
Q  500 caacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaa 553  Q
    |||||||||||||||||| ||||||||||  |||||||| | |||||||||||||    
T  946 caacaacaacaaccaagccttatcccactaaatggggtcagctacatggatcaaa 1000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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