View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2792-Insertion-12 (Length: 472)

Name: NF2792-Insertion-12
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2792-Insertion-12
NF2792-Insertion-12
[»] chr8 (23 HSPs)
chr8 (7-197)||(2271240-2271430)
chr8 (285-445)||(2270712-2270872)
chr8 (224-293)||(2270967-2271036)
chr8 (114-197)||(26021441-26021524)
chr8 (114-197)||(22324641-22324724)
chr8 (114-197)||(35806839-35806922)
chr8 (114-197)||(42013917-42014000)
chr8 (114-197)||(42072473-42072556)
chr8 (113-187)||(16818972-16819046)
chr8 (119-197)||(21525403-21525481)
chr8 (119-192)||(43282856-43282929)
chr8 (114-197)||(33934369-33934452)
chr8 (113-193)||(16523155-16523235)
chr8 (121-197)||(24065318-24065394)
chr8 (67-190)||(19334835-19334958)
chr8 (7-62)||(41178232-41178287)
chr8 (15-61)||(2355203-2355249)
chr8 (7-45)||(7421445-7421483)
chr8 (439-472)||(2270499-2270532)
chr8 (119-189)||(10112100-10112170)
chr8 (127-197)||(21488111-21488181)
chr8 (7-61)||(45192007-45192061)
chr8 (119-179)||(2824187-2824247)
[»] chr3 (27 HSPs)
chr3 (75-197)||(43347297-43347419)
chr3 (113-197)||(1781807-1781891)
chr3 (111-197)||(10839377-10839463)
chr3 (67-179)||(27642723-27642835)
chr3 (127-197)||(20382564-20382634)
chr3 (113-197)||(22845361-22845445)
chr3 (114-197)||(21853242-21853325)
chr3 (115-197)||(19649373-19649455)
chr3 (75-197)||(36539677-36539799)
chr3 (119-197)||(40845922-40846000)
chr3 (119-197)||(54546949-54547027)
chr3 (114-197)||(44994968-44995052)
chr3 (114-197)||(8950504-8950587)
chr3 (114-197)||(32352892-32352975)
chr3 (119-197)||(8926811-8926889)
chr3 (100-197)||(3178748-3178845)
chr3 (126-197)||(5391502-5391573)
chr3 (114-197)||(13856144-13856227)
chr3 (127-197)||(23467507-23467577)
chr3 (113-197)||(46685783-46685866)
chr3 (7-62)||(28172674-28172729)
chr3 (7-50)||(54918219-54918262)
chr3 (119-197)||(6280364-6280442)
chr3 (119-197)||(33103788-33103866)
chr3 (114-197)||(51336254-51336337)
chr3 (119-177)||(50663199-50663257)
chr3 (148-197)||(47889771-47889820)
[»] chr5 (24 HSPs)
chr5 (63-197)||(36769023-36769157)
chr5 (119-197)||(10081190-10081268)
chr5 (113-197)||(8456962-8457046)
chr5 (114-197)||(38397643-38397726)
chr5 (114-197)||(39862487-39862570)
chr5 (120-197)||(23218530-23218607)
chr5 (114-197)||(6257410-6257493)
chr5 (114-197)||(37169033-37169116)
chr5 (119-197)||(614397-614475)
chr5 (119-197)||(27916185-27916263)
chr5 (119-197)||(42119667-42119745)
chr5 (104-197)||(33271260-33271353)
chr5 (113-197)||(11856340-11856424)
chr5 (113-197)||(3341119-3341203)
chr5 (111-197)||(9737978-9738066)
chr5 (111-196)||(29790216-29790301)
chr5 (113-197)||(10115205-10115289)
chr5 (96-172)||(33188305-33188381)
chr5 (113-197)||(6174789-6174875)
chr5 (119-194)||(25560332-25560407)
chr5 (113-190)||(10052499-10052576)
chr5 (114-197)||(16618570-16618653)
chr5 (114-197)||(15631658-15631742)
chr5 (150-197)||(19322058-19322105)
[»] chr4 (28 HSPs)
chr4 (119-197)||(47084057-47084135)
chr4 (113-197)||(10094392-10094476)
chr4 (114-197)||(1535816-1535899)
chr4 (114-197)||(49284402-49284485)
chr4 (119-197)||(9742538-9742616)
chr4 (113-198)||(12792230-12792315)
chr4 (113-197)||(17888549-17888633)
chr4 (114-197)||(34241038-34241121)
chr4 (114-197)||(36012185-36012268)
chr4 (111-197)||(20818612-20818698)
chr4 (120-197)||(31377435-31377512)
chr4 (119-191)||(11054507-11054579)
chr4 (114-197)||(25954795-25954878)
chr4 (114-197)||(35018981-35019063)
chr4 (113-197)||(46474039-46474123)
chr4 (119-197)||(50328841-50328919)
chr4 (127-197)||(52632563-52632633)
chr4 (119-197)||(54090225-54090303)
chr4 (119-165)||(19124743-19124789)
chr4 (114-172)||(36851387-36851445)
chr4 (127-197)||(46583554-46583624)
chr4 (149-197)||(322584-322632)
chr4 (114-197)||(16338213-16338296)
chr4 (127-194)||(33982052-33982119)
chr4 (7-45)||(11458281-11458319)
chr4 (111-197)||(35322701-35322787)
chr4 (119-197)||(37801269-37801347)
chr4 (63-163)||(45784003-45784103)
[»] chr6 (13 HSPs)
chr6 (114-190)||(28750650-28750726)
chr6 (96-197)||(34103730-34103831)
chr6 (114-197)||(1727933-1728016)
chr6 (114-197)||(9231854-9231937)
chr6 (114-197)||(13627585-13627668)
chr6 (114-197)||(14309798-14309881)
chr6 (114-197)||(24694651-24694734)
chr6 (119-197)||(13103123-13103201)
chr6 (113-186)||(24497573-24497646)
chr6 (111-197)||(27863744-27863831)
chr6 (114-168)||(11084664-11084718)
chr6 (148-198)||(11212715-11212765)
chr6 (150-191)||(8412717-8412758)
[»] chr1 (22 HSPs)
chr1 (119-197)||(7742784-7742862)
chr1 (119-197)||(5558354-5558431)
chr1 (113-197)||(10907647-10907731)
chr1 (113-197)||(38859896-38859980)
chr1 (62-197)||(48392354-48392489)
chr1 (114-197)||(49902513-49902596)
chr1 (113-190)||(42456624-42456701)
chr1 (114-197)||(3346831-3346914)
chr1 (114-197)||(5975033-5975116)
chr1 (114-197)||(47022747-47022830)
chr1 (114-197)||(42517294-42517381)
chr1 (114-197)||(10156016-10156099)
chr1 (127-190)||(29149561-29149624)
chr1 (119-197)||(26511639-26511716)
chr1 (119-197)||(26835383-26835461)
chr1 (111-197)||(30745389-30745475)
chr1 (111-197)||(30766840-30766926)
chr1 (96-197)||(14796921-14797022)
chr1 (96-197)||(14805795-14805896)
chr1 (121-199)||(13131939-13132017)
chr1 (8-62)||(27124043-27124097)
chr1 (120-178)||(37189704-37189762)
[»] chr7 (18 HSPs)
chr7 (113-197)||(19334559-19334643)
chr7 (114-197)||(10576718-10576801)
chr7 (114-197)||(34259563-34259646)
chr7 (114-197)||(34707161-34707244)
chr7 (111-197)||(17303111-17303197)
chr7 (113-193)||(10334227-10334307)
chr7 (119-197)||(9770704-9770782)
chr7 (119-197)||(15017818-15017896)
chr7 (114-197)||(24320439-24320522)
chr7 (113-197)||(33057656-33057740)
chr7 (114-197)||(29238143-29238226)
chr7 (114-197)||(32876530-32876613)
chr7 (114-197)||(44164743-44164826)
chr7 (121-197)||(29981120-29981196)
chr7 (119-167)||(43342485-43342533)
chr7 (126-197)||(29555951-29556022)
chr7 (13-62)||(35850421-35850470)
chr7 (119-197)||(26284383-26284461)
[»] chr2 (20 HSPs)
chr2 (114-197)||(14942044-14942127)
chr2 (114-197)||(42769758-42769841)
chr2 (119-197)||(6318463-6318541)
chr2 (60-197)||(40277234-40277371)
chr2 (114-197)||(19181593-19181676)
chr2 (114-197)||(29846487-29846570)
chr2 (114-197)||(43139792-43139875)
chr2 (111-197)||(14539701-14539787)
chr2 (113-186)||(28321702-28321775)
chr2 (114-190)||(14186438-14186514)
chr2 (75-197)||(41674668-41674789)
chr2 (148-197)||(1387322-1387371)
chr2 (7-62)||(6247825-6247880)
chr2 (119-198)||(33009717-33009796)
chr2 (7-58)||(44194953-44195004)
chr2 (14-62)||(15524342-15524390)
chr2 (107-142)||(1386155-1386190)
chr2 (119-197)||(40780100-40780179)
chr2 (119-197)||(2888086-2888164)
chr2 (126-190)||(3956624-3956688)
[»] scaffold0086 (1 HSPs)
scaffold0086 (119-197)||(20836-20914)
[»] scaffold0045 (1 HSPs)
scaffold0045 (119-197)||(34457-34535)
[»] scaffold0123 (1 HSPs)
scaffold0123 (7-62)||(27996-28051)
[»] scaffold0079 (1 HSPs)
scaffold0079 (114-197)||(54564-54647)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 7e-87; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 2271430 - 2271240
Alignment:
Q  7 aataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattggcagtggcagttttaaggcccggcgagctcgggaagttgtctgga 106  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2271430 aataatgatgtcaaaaaacatgacaattttactaaactagccttaattactattggcagtggcagttttaaggcccggcgagctcgggaagttgtccgga 2271331  T
Q  107 ctcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||| |||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2271330 ctcagacctaatttttttgcaatttcttatgtaaatcatgctgaatttcttatataaacccctatatattaggtaatttctttagattttt 2271240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 285 - 445
Target Start/End: Complemental strand, 2270872 - 2270712
Alignment:
Q  285 atttgtatttcatttatttatgtagtacgtctccacctctcgtttgattttctcgtggttctctcttttttgggcattttagccctcatttatatcaaaa 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2270872 atttgtatttcatttatttatgtagtacgtctccacctctcgtttgaatttctcgtggttctctcttttttgggcattttagccctcatttatatcaaaa 2270773  T
Q  385 aatttgaaattcttaattttattatttactacacctttcttccctatactcttcaaaataa 445  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||    
T  2270772 aatttgaaattcttaatcttattatttactacacctttcttccatatactctttaaaataa 2270712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 2271036 - 2270967
Alignment:
Q  224 agttaaaacaacactcattttagaacggatagaatatttgtttggtcggtaaaggtgtatcatttgtatt 293  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  2271036 agttaaaacaacactcattttagaacggatagagtatttgtttggtcggtaaagatgtatcatttgtatt 2270967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 26021524 - 26021441
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  26021524 ccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaacccctataaattgggtaatttctttacattttt 26021441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 22324724 - 22324641
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| ||||||| |||||||| |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  22324724 ccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 22324641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 35806922 - 35806839
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| ||||||||    ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  35806922 ccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 35806839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 42014000 - 42013917
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   |||||||||||||||||| |||||| |||||| |||||||||| ||||||    
T  42014000 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttctttatattttt 42013917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 42072556 - 42072473
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||  |||||||||| ||||||    
T  42072556 ccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttt 42072473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 16818972 - 16819046
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttct 187  Q
    ||||| |||||||||||||||| ||||||||    ||||||||||||||||||||||||| ||||||||||||||    
T  16818972 cccaaattttttgcaatttcttttgtaaatctccttgaatttcttatataaacccctataaattgggtaatttct 16819046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 21525481 - 21525403
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||  |||||||||| ||||||    
T  21525481 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttt 21525403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 43282856 - 43282929
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttaga 192  Q
    |||||| ||||||||||||||||| || |||||||| ||||||||| ||||||| ||||||||||||| |||||    
T  43282856 ttttttacaatttcttatgtaaattcttctgaatttattatataaatccctataaattgggtaatttcattaga 43282929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 33934369 - 33934452
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| ||||||| |   ||||||||||||||||||||||||| |||||| ||||| |||| ||||||    
T  33934369 ccaaattttttgcaatttcttttgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttatattttt 33934452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 16523235 - 16523155
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagat 193  Q
    ||||| |||||| ||||||| |||||||||||   ||||||||||||||||| ||||||| |||||| || ||||||||||    
T  16523235 cccaaattttttacaatttcatatgtaaatccctatgaatttcttatataaatccctataaattgggcaacttctttagat 16523155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 24065394 - 24065318
Alignment:
Q  121 ttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||||| || ||||||    |||||||||||||||||| |||||| |||||| ||||||||||| |||||    
T  24065394 ttttgcaatttctcatataaatctctatgaatttcttatataaactcctataaattgggcaatttctttagcttttt 24065318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 19334958 - 19334835
Alignment:
Q  67 ggcagttttaaggcccggcgagctcgggaagttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacc 166  Q
    ||||||| |||||||||| |||   ||| |||| || ||| || | ||||| |||||||||||||||||| ||||| ||  ||||||| |||||||||||    
T  19334958 ggcagttctaaggcccggagagtctgggcagttatccggattccggcccaaattttttgcaatttcttatataaattcttatgaattttttatataaacc 19334859  T
Q  167 cctatatattgggtaatttcttta 190  Q
     ||||| ||| |  ||||||||||    
T  19334858 tctataaattagacaatttcttta 19334835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 41178232 - 41178287
Alignment:
Q  7 aataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 62  Q
    |||||||||||||||| | ||||||||||||||||||||| | || ||||||||||    
T  41178232 aataatgatgtcaaaagaaatgacaattttactaaactagtcatatttactattgg 41178287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 2355203 - 2355249
Alignment:
Q  15 tgtcaaaaaatatgacaattttactaaactagccttaattactattg 61  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||    
T  2355203 tgtcaaaagacatgacaattttactaaactagccttatttactattg 2355249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 7421445 - 7421483
Alignment:
Q  7 aataatgatgtcaaaaaatatgacaattttactaaacta 45  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  7421445 aataatgatgttaaaaaatatgacaattttactaaacta 7421483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 472
Target Start/End: Complemental strand, 2270532 - 2270499
Alignment:
Q  439 aaaataaagaataaacaaattattattttaccta 472  Q
    ||||||||||||||||||||||||||||||||||    
T  2270532 aaaataaagaataaacaaattattattttaccta 2270499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 10112170 - 10112100
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttcttt 189  Q
    ||||||||||||| |||||||||| |  || |||||||||||||||| | |||| |||||  |||||||||    
T  10112170 ttttttgcaattttttatgtaaattcctcttaatttcttatataaactcttataaattggacaatttcttt 10112100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 21488181 - 21488111
Alignment:
Q  127 aatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||| ||||||| |   ||||||||||||| ||||||| ||| |||||  |||||||||||||||||    
T  21488181 aatttcttgtgtaaattcctttgaatttcttatagaaaccccgataaattggacaatttctttagattttt 21488111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 45192007 - 45192061
Alignment:
Q  7 aataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattg 61  Q
    |||||||||||||||| | ||||||||||||| ||||||  |||| |||||||||    
T  45192007 aataatgatgtcaaaagacatgacaattttacgaaactaatcttatttactattg 45192061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 2824187 - 2824247
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattggg 179  Q
    ||||||||||||| |||||||||| |  || |||||||||||||| ||| |||| ||||||    
T  2824187 ttttttgcaattttttatgtaaattcctctaaatttcttatataaccccttataaattggg 2824247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 43347297 - 43347419
Alignment:
Q  75 taaggcccggcgagctcgggaagttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatata 174  Q
    |||| ||||||||||| ||| ||||||| || ||| ||||||| |||||||||||||||||||||||| |  |||||||||||||||||||||||| | |    
T  43347297 taagacccggcgagcttgggcagttgtccgggctccgacccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctacaaa 43347396  T
Q  175 ttgggtaatttctttagattttt 197  Q
    ||||| |||||||||||||||||    
T  43347397 ttgggcaatttctttagattttt 43347419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 1781891 - 1781807
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  1781891 cccaaattttttgcaatttcttatgtaaatccctctgaatttcttatataaaccccaataaattgggcaatttctttagattttt 1781807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 10839377 - 10839463
Alignment:
Q  111 gacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||| ||||||||||||||||||||||||    |||||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  10839377 gacccaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaatttctttagattttt 10839463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 27642835 - 27642723
Alignment:
Q  67 ggcagttttaaggcccggcgagctcgggaagttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacc 166  Q
    ||||||| |||||||||||||||| ||| ||||| |||| |||   | ||| |||||||||||||||||||||||||||  ||||||||||||||||| |    
T  27642835 ggcagttctaaggcccggcgagcttgggcagttgcctgggctcctgctcaaattttttgcaatttcttatgtaaatccttttgaatttcttatataaatc 27642736  T
Q  167 cctatatattggg 179  Q
    | |||| ||||||    
T  27642735 cttataaattggg 27642723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 20382634 - 20382564
Alignment:
Q  127 aatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||||||||||   ||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  20382634 aatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggaaatttctttagattttt 20382564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 22845361 - 22845445
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| |||||||||||||||||||||||| |  || ||||||||||||||||||||||| ||| |  |||||||||||||||||    
T  22845361 cccaaattttttgcaatttcttatgtaaattcacctaaatttcttatataaacccctataaatttgacaatttctttagattttt 22845445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 21853325 - 21853242
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||| ||||||| |||||| |||||||||| ||||||    
T  21853325 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaaccctataaattgggcaatttctttacattttt 21853242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 19649373 - 19649455
Alignment:
Q  115 caacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||| |||||||||||||||||    |||||||||||||||||||| |||| |||||  |||||||||||||||||    
T  19649373 caacttttttgtaatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaatttctttagattttt 19649455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 36539799 - 36539677
Alignment:
Q  75 taaggcccggcgagctcgggaagttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatata 174  Q
    ||||||| |||||||||||| ||| | | || ||| | || || |||| |||||||||||||||||||||   | |||||||||||||| |||||||| |    
T  36539799 taaggcctggcgagctcgggcagtcgcccgggctccggcctaaattttatgcaatttcttatgtaaatccctataaatttcttatataatcccctataaa 36539700  T
Q  175 ttgggtaatttctttagattttt 197  Q
    ||||| |||||||||| ||||||    
T  36539699 ttgggcaatttctttaaattttt 36539677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 40845922 - 40846000
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||||| || |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  40845922 ttttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 40846000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 54547027 - 54546949
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||||||||| |||||| |   ||||||||||||||||||||||||| |||||  |||||||||||||||||    
T  54547027 ttttttgcaatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaatttctttagattttt 54546949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 44994968 - 44995052
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccc-tatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||| |||| |||||| |||||||||| ||||||    
T  44994968 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaccccttataaattgggcaatttctttacattttt 44995052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 8950504 - 8950587
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| ||||||| |   ||||||||||||||||| ||||||| |||||| |||||||||| ||||||    
T  8950504 ccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaatccctataaattgggcaatttctttacattttt 8950587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 32352975 - 32352892
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| | |||||||   ||||||||||||||||||||||||| ||| || |||||||||| ||||||    
T  32352975 ccaatttttttgcaatttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaatttctttacattttt 32352892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 8926889 - 8926811
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||| ||||||||| |  |||||||||| ||||||||||||||| ||| || ||||||| |||||||||    
T  8926889 ttttttgcaatttcatatgtaaattcctctgaatttctgatataaacccctataaatttggcaatttctgtagattttt 8926811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 3178845 - 3178748
Alignment:
Q  100 gtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||| ||| | ||||| |||||| ||||||||| |||||||||   ||||||||||||||||| | ||||| |||||| ||||||||||| |||||    
T  3178845 gtctgggctccggcccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaatttctttagtttttt 3178748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 5391573 - 5391502
Alignment:
Q  126 caatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||| |||||||||   ||||||||||||||||||||||||| |||||  |||||||||| ||||||    
T  5391573 caatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttt 5391502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 13856227 - 13856144
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||| ||||||||| |||||||||   ||||||||||||||||| ||||||| |||||  |||||||||| ||||||    
T  13856227 ccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattggacaatttctttacattttt 13856144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 23467507 - 23467577
Alignment:
Q  127 aatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| || |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  23467507 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 23467577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 46685783 - 46685866
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| ||||||||| ||||||||||||||||  || |||||||||||||||| |||||| ||| |  |||||||||| ||||||    
T  46685783 cccaaattttttgca-tttcttatgtaaatccccctaaatttcttatataaactcctataaatttgacaatttctttatattttt 46685866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 28172674 - 28172729
Alignment:
Q  7 aataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 62  Q
    ||||||||| |||||  ||||||||||||||||||||||| |||||||||| ||||    
T  28172674 aataatgatctcaaatgatatgacaattttactaaactagtcttaattactgttgg 28172729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 54918262 - 54918219
Alignment:
Q  7 aataatgatgtcaaaaaatatgacaattttactaaactagcctt 50  Q
    |||||||||||||||| | |||||||||||||||||||||||||    
T  54918262 aataatgatgtcaaaagacatgacaattttactaaactagcctt 54918219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 6280364 - 6280442
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||||||    |||||||||||||||||||| ||||| ||| |  ||||| |||||||||||    
T  6280364 ttttgtgcaatttcttatgtaaatttccctgaatttcttatataaacctctataaatttgacaatttatttagattttt 6280442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 33103866 - 33103788
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||||||||||| |   | ||||||||||||||  ||||||| ||||| |||||| |||| ||||||    
T  33103866 ttttttgcaatttcttatgtaaattcccttaaatttcttatataagtccctataaattggataatttatttaaattttt 33103788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 51336337 - 51336254
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| ||||||||||||| |||||||||| || |||||||| ||||||||| |  |||| ||| |  |||||||||| ||||||    
T  51336337 ccaatttttttgcaattttttatgtaaattctcctgaattttttatataaatctttataaatttgacaatttctttaaattttt 51336254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 50663257 - 50663199
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattg 177  Q
    ||||||||||||||||||||| || |  || |||||||||||||||||| |||| ||||    
T  50663257 ttttttgcaatttcttatgtagattcctctaaatttcttatataaacccttataaattg 50663199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 47889820 - 47889771
Alignment:
Q  148 tgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||||  |||||| |||||| |||||||||| ||||||    
T  47889820 tgaatttcttatataaattcctataaattgggcaatttctttaaattttt 47889771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 36769023 - 36769157
Alignment:
Q  63 cagtggcagttttaaggcccggcgagctcgggaagttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatata 162  Q
    ||||||||||| ||||| |||| |||| | || | ||||| |||||| | ||||| |||||||||||||||||||||||| |  ||||||||||||||||    
T  36769023 cagtggcagttataaggtccggtgagcccaggcacttgtccggactccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatata 36769122  T
Q  163 aacccctatatattgggtaatttctttagattttt 197  Q
    |||| ||||  ||| || |||||||||||||||||    
T  36769123 aacctctatgaattaggcaatttctttagattttt 36769157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 10081268 - 10081190
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||| |||||||||||||||||||   ||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  10081268 tttttttcaatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttagattttt 10081190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 8456962 - 8457046
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| |||||| |||||||||||||||||||   |||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  8456962 cccaaatttttttcaatttcttatgtaaatccctatgaatttcttatataaccccctataaattgggcaatttctttagattttt 8457046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 38397726 - 38397643
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  38397726 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 38397643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 39862487 - 39862570
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| ||||||| |   ||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  39862487 ccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttagattttt 39862570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 23218607 - 23218530
Alignment:
Q  120 tttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  23218607 tttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 23218530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 6257410 - 6257493
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||| ||||||||||| |||||| |||||||||| ||||||    
T  6257410 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaacccctataaattgggcaatttctttacattttt 6257493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 37169033 - 37169116
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| ||||||||||||| || |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  37169033 ccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 37169116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 614397 - 614475
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||||||||||| |  |||||||| ||||||||| ||||||| ||| || |||||||||||||||||    
T  614397 ttttttgcaatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaatttctttagattttt 614475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 27916263 - 27916185
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||| |||||| |||| | |||||| ||||||||||    
T  27916263 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaactcctataaattgagcaatttcattagattttt 27916185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 42119745 - 42119667
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||| |||||||||||||||| |  |||||||||||||||||||| ||||| |||||  |||||||||||||||||    
T  42119745 ttttttgtaatttcttatgtaaattcctctgaatttcttatataaacctctataaattggacaatttctttagattttt 42119667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 33271260 - 33271353
Alignment:
Q  104 ggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||| | ||||| |||||| ||||||||||||||||| | | ||||||||||||||||||| ||||| |||||  |||||||||| ||||||    
T  33271260 ggactccggcccaatttttttacaatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaatttctttatattttt 33271353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 11856424 - 11856340
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| |||| || |||||||||||||||||   |||||||||||||||||| | ||||| |||||| |||||||||||||||||    
T  11856424 cccaagttttctgtaatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttagattttt 11856340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 3341119 - 3341203
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaa-tttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| |||||||||||||||||||||||| || ||||| ||| |||||||| |||||||| |||||| ||||||||||| |||||    
T  3341119 cccaaattttttgcaatttcttatgtaaattct-ctgaatttttttatataatcccctataaattgggaaatttctttagcttttt 3341203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 9737978 - 9738066
Alignment:
Q  111 gacccaacttttttgcaatttcttatgtaaa--tcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||| |||||| ||||||||||||||||  |||   ||||||||||||||||| ||||||| |||||  |||||||||||||||||    
T  9737978 gacccaattttttttcaatttcttatgtaaaaatccctatgaatttcttatataaatccctataaattggacaatttctttagattttt 9738066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 29790216 - 29790301
Alignment:
Q  111 gacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagatttt 196  Q
    |||||||  ||||| ||||||||||||||||| ||  |||||||||||||||||||  |||| |||||| ||||||||||| ||||    
T  29790216 gacccaaaatttttacaatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaatttctttagttttt 29790301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 10115289 - 10115205
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| ||||||||||||| |||||||||| |  ||| |||||||||||||||||| ||| ||| |  |||||||||||||||||    
T  10115289 cccaatttttttgcaattttttatgtaaattcctctggatttcttatataaaccccaataaattagacaatttctttagattttt 10115205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 33188305 - 33188381
Alignment:
Q  96 agttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctata 172  Q
    |||||||||||||| || ||||   |||||||||||||||||||||| |  || |||||||||||||||||||||||    
T  33188305 agttgtctggactctgatccaaaacttttgcaatttcttatgtaaattcatctaaatttcttatataaacccctata 33188381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 6174875 - 6174789
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaa--cccctatatattgggtaatttctttagattttt 197  Q
    ||||| ||||||| ||||||||| |||||| || ||||||||||||||||||  |||||||| |||||  |||||||||| ||||||    
T  6174875 cccaaattttttgtaatttcttacgtaaattcttctgaatttcttatataaacccccctataaattggacaatttctttatattttt 6174789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 25560332 - 25560407
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagatt 194  Q
    |||||| ||||||||||||||||||||  | ||||||||||||||||  ||||| |||||  ||||||||||||||    
T  25560332 tttttttcaatttcttatgtaaatccttataaatttcttatataaacatctataaattggacaatttctttagatt 25560407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 10052499 - 10052576
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttcttta 190  Q
    ||||| |||||| |||||||||||||||||||  ||||| | |||||||||||  ||||| ||| |||||||||||||    
T  10052499 cccaatttttttacaatttcttatgtaaatccctctgaactacttatataaacgtctataaattaggtaatttcttta 10052576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 16618570 - 16618653
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||| ||||||||| |||||||||   |||||||||||||||||| |||||| |||||  ||||| |||| ||||||    
T  16618570 ccaaattttttacaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattggacaatttttttatattttt 16618653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 15631742 - 15631658
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaa-cccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||| ||||||||| | |||||||   ||||||||||||||||| |||||||| |||||  |||||||||| ||||||    
T  15631742 ccaaattttttacaatttcttgtataaatccctatgaatttcttatataaaccccctataaattggacaatttctttacattttt 15631658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 19322058 - 19322105
Alignment:
Q  150 aatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||| |||||| |||||| |||| ||||||||||||    
T  19322058 aatttcttatataaactcctataaattgggcaattactttagattttt 19322105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 47084135 - 47084057
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47084135 ttttttgcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttctttagattttt 47084057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 10094392 - 10094476
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| ||||||| ||||||||||||||||    |||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  10094392 cccaaattttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttatttagattttt 10094476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 1535899 - 1535816
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  1535899 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 1535816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 49284485 - 49284402
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  49284485 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 49284402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 9742538 - 9742616
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||| ||||||||||||||||| |  ||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  9742538 ttttttacaatttcttatgtaaattcctctgaatttcttatattaacccctataaattgggcaatttctttagattttt 9742616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 12792230 - 12792315
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttta 198  Q
    ||||| ||||||| ||||||||||||||||    |||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  12792230 cccaatttttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaattactttagattttta 12792315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 17888549 - 17888633
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| |||||| ||||||||||||||||| |   |||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  17888549 cccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaccccctataaattgggcaatttctttagattttt 17888633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 34241121 - 34241038
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||| ||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  34241121 ccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 34241038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 36012185 - 36012268
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| ||||||||||||| || |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  36012185 ccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 36012268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 20818698 - 20818612
Alignment:
Q  111 gacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||| |||||||||||||||| |||||||||   |||||||||||||||||| |||||| |||||  ||||| |||||||||||    
T  20818698 gacccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaactcctataaattggtcaatttttttagattttt 20818612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 31377512 - 31377435
Alignment:
Q  120 tttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| |||||||||||||||||||   |||||||||||||||| || ||||| |||||| |||||||||||||||||    
T  31377512 ttttttcaatttcttatgtaaatccctatgaatttcttatataaccctctataaattgggcaatttctttagattttt 31377435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 11054579 - 11054507
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttag 191  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||| ||||| |||||| ||| |||||||    
T  11054579 ttttttgcaatttcttatgtaaatccctatgaatttcttatataaacctctataaattgggcaatctctttag 11054507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 25954878 - 25954795
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| ||||||| |   |||||||||||||||||| |||||| |||||| |||||||||| ||||||    
T  25954878 ccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaatttctttacattttt 25954795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 35019063 - 35018981
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||| ||||||||| ||||||||||  |||||||||||||||||||| |||| ||| ||||||||||||| ||||||    
T  35019063 ccaaattttttacaatttcttgtgtaaatccta-tgaatttcttatataaacccttataaattaggtaatttctttacattttt 35018981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 46474123 - 46474039
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaat-cctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| |||||||||||||||||||||||| |||| ||||||| |||||||||||| |||| ||||   |||||||||||||||||    
T  46474123 cccaaattttttgcaatttcttatgtaaattcctg-tgaattttttatataaacccatataaattgtacaatttctttagattttt 46474039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 50328919 - 50328841
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||| ||||||| |  || ||||||||||||||||| ||||| |||||  |||||||||| ||||||    
T  50328919 ttttttgcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaatttctttaaattttt 50328841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 52632633 - 52632563
Alignment:
Q  127 aatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||| |||||||||   ||||||||||||||||| ||||||| |||||| |||||||||| ||||||    
T  52632633 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttt 52632563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 54090303 - 54090225
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||| ||| |||||||||  |||||||| |||||||||| | |||| |||||| ||||| |||||||||||    
T  54090303 ttttttgcaattccttttgtaaatccctctgaatttattatataaactcttataaattgggcaatttttttagattttt 54090225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 19124743 - 19124789
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaac 165  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||    
T  19124743 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaac 19124789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 36851387 - 36851445
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctata 172  Q
    |||| |||||||||||||||| |||||||||   ||||||| |||||||||||||||||    
T  36851387 ccaaattttttgcaatttcttgtgtaaatccctatgaatttattatataaacccctata 36851445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 46583554 - 46583624
Alignment:
Q  127 aatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| || |||||||||   ||||||||||||||||||||||||| ||| || |||||||||| ||||||    
T  46583554 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattaggcaatttctttacattttt 46583624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 322584 - 322632
Alignment:
Q  149 gaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||||||||||| |||||  |||||||||| ||||||    
T  322584 gaatttcttatataaacccctataaattggacaatttctttaaattttt 322632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 16338213 - 16338296
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| ||||||||||||| || ||||||| |   ||||||| ||||||||| ||||||| |||||  |||||||||| ||||||    
T  16338213 ccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaatttctttacattttt 16338296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 33982119 - 33982052
Alignment:
Q  127 aatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagatt 194  Q
    |||||||| |||||||||  || |||||||||||||||| | |||| ||| | |||||||||||||||    
T  33982119 aatttcttttgtaaatccctctaaatttcttatataaactcttataaattagataatttctttagatt 33982052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 11458319 - 11458281
Alignment:
Q  7 aataatgatgtcaaaaaatatgacaattttactaaacta 45  Q
    |||||||||||||||||| || |||||||||||||||||    
T  11458319 aataatgatgtcaaaaaacataacaattttactaaacta 11458281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 35322701 - 35322787
Alignment:
Q  111 gacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||| ||||||| ||||| |||| |||||    |||||| ||||||||||||| ||||| ||||   |||||||||||||||||    
T  35322701 gacccaatttttttgtaattttttatataaatttctctgaatctcttatataaacctctataaattgaacaatttctttagattttt 35322787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 37801269 - 37801347
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||| |||||||     ||||||| ||||||||| ||||||| |||||| || ||||||| ||||||    
T  37801269 ttttttgcaatttcttgtgtaaatttctatgaattttttatataaatccctataaattgggcaaattctttacattttt 37801347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 45784103 - 45784003
Alignment:
Q  63 cagtggcagttttaaggcccggcgagctcgggaagttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatata 162  Q
    ||||||| ||| ||||| ||||||||| | |  |||||||  | ||| | ||||| |||||||||||||||||  |||||||  ||||||||||| ||||    
T  45784103 cagtggcggttctaaggtccggcgagcccagacagttgtcatggctccggcccaatttttttgcaatttcttagttaaatccctctgaatttcttctata 45784004  T
Q  163 a 163  Q
    |    
T  45784003 a 45784003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 28750650 - 28750726
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttcttta 190  Q
    |||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| ||||||||||    
T  28750650 ccaatttttttgcaatttcttatgtaaattcttctgaatttcttatataaacccctataaattgggcaatttcttta 28750726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 34103831 - 34103730
Alignment:
Q  96 agttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattt 195  Q
    ||||||| |||||| ||||||  ||||||| ||||| |||||||||| |  ||||||||||||||||||||| |||| |||||| |||||||||||||||    
T  34103831 agttgtccggactctgacccacgttttttgtaatttattatgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttagattt 34103732  T
Q  196 tt 197  Q
    ||    
T  34103731 tt 34103730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 1727933 - 1728016
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||| | |||||||||| ||||||    
T  1727933 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacattttt 1728016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 9231854 - 9231937
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| ||||||||    ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  9231854 ccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 9231937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 13627668 - 13627585
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||| | |||||||||| ||||||    
T  13627668 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacattttt 13627585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 14309798 - 14309881
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||| ||||||| |||||| |||||||||| ||||||    
T  14309798 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttt 14309881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 24694651 - 24694734
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   |||||||||||||||||| |||||| |||||| |||||||||| ||||||    
T  24694651 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttctttacattttt 24694734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 13103123 - 13103201
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||||| |||||||||| |  ||||||||||||||||||||  |||| |||||| |||||||||||||||||    
T  13103123 ttttttgcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttagattttt 13103201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 24497573 - 24497646
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttc 186  Q
    ||||| ||||||||||||| || ||||||| |  |||||||||||||||||||||||||| |||||| ||||||    
T  24497573 cccaaattttttgcaattttttgtgtaaattcctctgaatttcttatataaacccctataaattgggcaatttc 24497646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 27863831 - 27863744
Alignment:
Q  111 gacccaacttttttgcaattt-cttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||  |||||||||||| |||||||||||    ||||||||||||||||||||| |||| |||||  |||||||||||||||||    
T  27863831 gacccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaatttctttagattttt 27863744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 11084718 - 11084664
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccc 168  Q
    |||| |||||||||||||||| ||||||| |   |||||||||||||||||||||    
T  11084718 ccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccc 11084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 11212765 - 11212715
Alignment:
Q  148 tgaatttcttatataaacccctatatattgggtaatttctttagattttta 198  Q
    ||||||| || |||||| ||||||| |||||| ||||||||||||||||||    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttagattttta 11212715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 8412717 - 8412758
Alignment:
Q  150 aatttcttatataaacccctatatattgggtaatttctttag 191  Q
    |||||||||||||||| |||||| |||||| |||||||||||    
T  8412717 aatttcttatataaacgcctataaattgggcaatttctttag 8412758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 7742784 - 7742862
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  7742784 ttttttgcaatttcttgtgtaaatccttatgaatttcttatataaacccctataaattgggcaatttctttacattttt 7742862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 5558431 - 5558354
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||||||||||| |||||  |||||||||||||||||    
T  5558431 ttttttgcaatttcttatgtaaa-ccttccgaatttcttatataaacccctataaattggacaatttctttagattttt 5558354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 10907647 - 10907731
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| |||||||||||||||||||||||| |  |||||||||||||||||||||||||| ||  |  |||||||||||||||||    
T  10907647 cccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaatttctttagattttt 10907731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 38859980 - 38859896
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| |||||| ||||||||||||||||| |   ||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  38859980 cccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttagattttt 38859896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 48392354 - 48392489
Alignment:
Q  62 gcagtggcagttttaaggcccggcgagctcgggaagttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatat 161  Q
    |||| ||| ||| ||||||||||||| |||||| | | | | || ||| || |||| |||||||||||||||| |||||||||   ||||||||||||||    
T  48392354 gcaggggcggttctaaggcccggcgacctcgggcactcgcccgggctccgagccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatat 48392453  T
Q  162 aaacccctatatattgggtaatttctttagattttt 197  Q
    ||| ||||||| |||||| |||||| ||| ||||||    
T  48392454 aaatccctataaattgggcaatttcattacattttt 48392489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 49902596 - 49902513
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| || ||| |||||||||| ||||||    
T  49902596 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaatagggcaatttctttacattttt 49902513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 42456701 - 42456624
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttcttta 190  Q
    ||||| |||||||| ||||||||||||||| |   ||||||||||||||||||||||||| |||||| ||||||||||    
T  42456701 cccaaattttttgctatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttcttta 42456624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 3346914 - 3346831
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| ||||||||||||| || |||||||||   ||||||||||||||||||||||||| |||||  |||||||||| ||||||    
T  3346914 ccaaattttttgcaatttgttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttt 3346831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 5975116 - 5975033
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||| ||||||||| |||||||||    |||||||||||||||||||||||| ||| || |||||||||| ||||||    
T  5975116 ccaaatttttttcaatttcttgtgtaaatccctaagaatttcttatataaacccctataaattaggcaatttctttacattttt 5975033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 47022830 - 47022747
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| ||||||||    |||||||||||||||||| |||||| ||| || |||||||||| ||||||    
T  47022830 ccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaactcctataaattaggcaatttctttatattttt 47022747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 42517294 - 42517381
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatat----aaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||    ||||||||||| |||||| |||||||||| ||||||    
T  42517294 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacaaacccctataaattgggcaatttctttacattttt 42517381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 10156016 - 10156099
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| ||||||| |   ||||||||||||||||||  ||||| |||||  |||||||||| ||||||    
T  10156016 ccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacttctataaattggacaatttctttatattttt 10156099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 29149561 - 29149624
Alignment:
Q  127 aatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttcttta 190  Q
    ||||| || |||||||||   ||||||||||||||||||||||||| |||||| ||||||||||    
T  29149561 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 29149624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 26511639 - 26511716
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||  ||| || ||||  ||||||||||| ||||||    
T  26511639 ttttttgcaatttcttatgtaaa-ccccctgaatttcttatataaattcctgtaaattgaataatttctttaaattttt 26511716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 26835461 - 26835383
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||||| |||||||||| |   |||||||||||||||||| |||||| ||||   ||||| |||||||||||    
T  26835461 ttttttgcaatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttagattttt 26835383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 30745475 - 30745389
Alignment:
Q  111 gacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||| | ||||||||||| ||||||||||    ||||||||||| |||||| ||||||| |||||  |||||||||| ||||||    
T  30745475 gacccaaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttt 30745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 30766926 - 30766840
Alignment:
Q  111 gacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||| | ||||||||||| ||||||||||    ||||||||||| |||||| ||||||| |||||  |||||||||| ||||||    
T  30766926 gacccaaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttt 30766840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 14797022 - 14796921
Alignment:
Q  96 agttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattt 195  Q
    |||||||||| ||| ||||||   |||||||||||| |||||||||| |  |||||||||||||||| || | |||| ||| ||  ||| ||||||||||    
T  14797022 agttgtctgggctccgacccataatttttgcaattttttatgtaaattcctctgaatttcttatatacacacttataaattaggccattactttagattt 14796923  T
Q  196 tt 197  Q
    ||    
T  14796922 tt 14796921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 14805896 - 14805795
Alignment:
Q  96 agttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattt 195  Q
    |||||||||| ||| ||||||   |||||||||||| |||||||||| |  |||||||||||||||| || | |||| ||| ||  ||| ||||||||||    
T  14805896 agttgtctgggctccgacccataatttttgcaattttttatgtaaattcctctgaatttcttatatacacacttataaattaggccattactttagattt 14805797  T
Q  196 tt 197  Q
    ||    
T  14805796 tt 14805795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 13132017 - 13131939
Alignment:
Q  121 ttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagatttttac 199  Q
    ||||| |||||||||||||||| |  || ||||| ||||||||| | ||||| |||||  ||||||||||| |||||||    
T  13132017 ttttgtaatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaatttctttagctttttac 13131939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 27124097 - 27124043
Alignment:
Q  8 ataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 62  Q
    |||||| |||||||| | |||||||||||||||||||| ||||| ||| ||||||    
T  27124097 ataatggtgtcaaaagacatgacaattttactaaactaaccttatttattattgg 27124043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 37189762 - 37189704
Alignment:
Q  120 tttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgg 178  Q
    ||||||||||||||||||||||||    ||||||||||||||||| | ||||| |||||    
T  37189762 tttttgcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 37189704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 19334559 - 19334643
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| |||||||||||||||||||||||| |   ||||||||||||||||||||||||| |||||  |||||||||||||||||    
T  19334559 cccaatttttttgcaatttcttatgtaaatacctatgaatttcttatataaacccctataaattggacaatttctttagattttt 19334643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 10576801 - 10576718
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  10576801 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 10576718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 34259646 - 34259563
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  34259646 ccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 34259563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 34707244 - 34707161
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  34707244 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 34707161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 17303111 - 17303197
Alignment:
Q  111 gacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||| |||||||||||||||||||||||| |   |||||||||||||||||||| | || |||||| |||||||||||||||||    
T  17303111 gacccaatttttttgcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttagattttt 17303197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 10334307 - 10334227
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagat 193  Q
    ||||| |||||||||||||||||||||||| |  ||||||||||||||||||| | |||| |||||| |||||||||||||    
T  10334307 cccaatttttttgcaatttcttatgtaaattcctctgaatttcttatataaactcttataaattgggcaatttctttagat 10334227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 9770782 - 9770704
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||| ||||  |||||  |||||||||||| ||||    
T  9770782 ttttttgcaatttcttatgtaaatcatcctgaatttcttatataaaccactatgaattggacaatttctttagactttt 9770704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 15017896 - 15017818
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||| | |||| |||||  |||||||||||||||||    
T  15017896 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttctttagattttt 15017818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 24320439 - 24320522
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaat-cctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| ||||||| ||| | |||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  24320439 ccaaattttttgcaatttcttgtgtaaattcctac-gaatttcttatataaacccctataaattgggcaatttctttacattttt 24320522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 33057656 - 33057740
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| |||||| |||||||||||||||||||   |||||||||||||||| |||||||| ||||   |||||||||||||||||    
T  33057656 cccaattttttttcaatttcttatgtaaatccctatgaatttcttatataatcccctataaattgaacaatttctttagattttt 33057740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 29238143 - 29238226
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||| | |||||  |||||||||| ||||||    
T  29238143 ccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctaaaaattggaaaatttctttacattttt 29238226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 32876530 - 32876613
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||| ||||   ||||||||||||||||||||||||| |||||  |||||||||| ||||||    
T  32876530 ccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaatttctttacattttt 32876613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 44164743 - 44164826
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||     ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  44164743 ccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 44164826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 29981120 - 29981196
Alignment:
Q  121 ttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||| |||||||||   ||||||||||||||||||  ||||| |||||  |||||||||| ||||||    
T  29981120 ttttgcaatttcttgtgtaaatccctatgaatttcttatataaacttctataaattggacaatttctttatattttt 29981196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 43342533 - 43342485
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaaccc 167  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||||    
T  43342533 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaaccc 43342485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 29555951 - 29556022
Alignment:
Q  126 caatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||| ||||||| |   ||||||||||||||||||||||||| |||||  |||||||||| ||||||    
T  29555951 caatttcttgtgtaaattcctatgaatttcttatataaacccctataaattggacaatttctttacattttt 29556022  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 35850421 - 35850470
Alignment:
Q  13 gatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 62  Q
    |||||||||| | |||| ||||||||||||||||||||| ||||||||||    
T  35850421 gatgtcaaaagacatgagaattttactaaactagccttatttactattgg 35850470  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 26284383 - 26284461
Alignment:
Q  119 ttttttgcaatttcttatgt-aaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||||||| ||||||  |||||||||||||| ||||   |||| |||||  |||||||||||||||||    
T  26284383 ttttttgcaatttcttatgtaaaatccctctgaatttcttata-aaactagtataaattggacaatttctttagattttt 26284461  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 14942044 - 14942127
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  14942044 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 14942127  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 42769758 - 42769841
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  42769758 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 42769841  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 6318463 - 6318541
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||| |||||||||||||||||||   ||||||||||||||||| ||||||| |||||| |||||||||||||||||    
T  6318463 tttttttcaatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagattttt 6318541  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 197
Target Start/End: Original strand, 40277234 - 40277371
Alignment:
Q  60 tggcagtggcagttttaaggcccggcgagctcgggaagttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttat 159  Q
    |||||| ||| ||| ||||||||||||| | |||| | ||||| || ||| |  |||| ||||||||||||| ||||||||||||   | ||||||||||    
T  40277234 tggcaggggcggttctaaggcccggcgaccccgggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaatccctataaatttcttat 40277333  T
Q  160 ataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||| ||||||| |||||| |||||||||| ||||||    
T  40277334 ataaatccctataaattgggcaatttctttacattttt 40277371  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 19181676 - 19181593
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| ||||||| |   ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  19181676 ccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttacattttt 19181593  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 29846570 - 29846487
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||  |||||||||| ||||||    
T  29846570 ccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttt 29846487  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 43139875 - 43139792
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| |||||||||||||||||||||| | |  || ||||||||||||||||||||||| |||| | |||||||||||||||||    
T  43139875 ccaatttttttgcaatttcttatgtaagttcctcttaatttcttatataaacccctataaattgagcaatttctttagattttt 43139792  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 14539701 - 14539787
Alignment:
Q  111 gacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||| |||||||||||||||||||||| | |  ||||||||||||||||||  |||||| ||| || |||||||||||||||||    
T  14539701 gacccaaattttttgcaatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaatttctttagattttt 14539787  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 28321702 - 28321775
Alignment:
Q  113 cccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttc 186  Q
    ||||| |||||||||||||||||||||||| || |||||| |||||||||||||| |||| |||||| ||||||    
T  28321702 cccaatttttttgcaatttcttatgtaaattctcctgaatatcttatataaacccttataaattgggcaatttc 28321775  T

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Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 14186438 - 14186514
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttcttta 190  Q
    |||| ||||||| |||||||| |||||||||   ||||||||||||||||||||||||| |||||| ||||||||||    
T  14186438 ccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 14186514  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 41674668 - 41674789
Alignment:
Q  75 taaggcccggcgagctcgggaagttgtctggactcggacccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatata 174  Q
    ||||||||| |||||  ||| |||||||  | ||| ||||||| | || ||||||||||||||||||||   |||||||| |||||||||||| |||| |    
T  41674668 taaggcccgacgagcctgggcagttgtcgaggctccgacccaa-tgttatgcaatttcttatgtaaatctctctgaattttttatataaacccttataaa 41674766  T
Q  175 ttgggtaatttctttagattttt 197  Q
    ||||  |||||||||||||||||    
T  41674767 ttggacaatttctttagattttt 41674789  T

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Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 1387322 - 1387371
Alignment:
Q  148 tgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  1387322 tgaatttcttagataaacccctataaattgggtaatttctttagattttt 1387371  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 6247880 - 6247825
Alignment:
Q  7 aataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 62  Q
    ||||||||||||||||   |||||||||||||||||||||||||| ||||||||||    
T  6247880 aataatgatgtcaaaagtcatgacaattttactaaactagccttatttactattgg 6247825  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 33009796 - 33009717
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttta 198  Q
    |||||| ||||||||||| |||||||   ||||||| ||||||||| || |||| |||||  ||||||||||||||||||    
T  33009796 ttttttacaatttcttatataaatccctatgaatttgttatataaatccttataaattggacaatttctttagattttta 33009717  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 44194953 - 44195004
Alignment:
Q  7 aataatgatgtcaaaaaatatgacaattttactaaactagccttaattacta 58  Q
    |||||||||||||||  |||||||||||||||||||||| ||||| ||||||    
T  44194953 aataatgatgtcaaatgatatgacaattttactaaactaaccttatttacta 44195004  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 15524390 - 15524342
Alignment:
Q  14 atgtcaaaaaatatgacaattttactaaactagccttaattactattgg 62  Q
    ||||||||| | ||||||||||||||||| |||||||| ||||||||||    
T  15524390 atgtcaaaagacatgacaattttactaaattagccttatttactattgg 15524342  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 1386155 - 1386190
Alignment:
Q  107 ctcggacccaacttttttgcaatttcttatgtaaat 142  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1386155 ctcggacccaatttttttgcaatttcttatgtaaat 1386190  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 40780179 - 40780100
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaac-ccctatatattgggtaatttctttagattttt 197  Q
    ||||||| |||||||||||||||| |  ||||||||||||||||||| ||||||| ||| |  ||||| |||| ||||||    
T  40780179 ttttttgtaatttcttatgtaaattcctctgaatttcttatataaacaccctataaatttgacaatttttttaaattttt 40780100  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 2888164 - 2888086
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||| |||||||||||||||||    ||||||| |||||||||| |||||| ||||   ||||| |||||||||||    
T  2888164 ttttttgtaatttcttatgtaaatctctatgaattttttatataaactcctataaattgaacaatttttttagattttt 2888086  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 3956688 - 3956624
Alignment:
Q  126 caatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttcttta 190  Q
    |||||| ||||||||||||   ||||||| |||||||||||||| || |||||  ||||||||||    
T  3956688 caattttttatgtaaatccctatgaatttattatataaacccctgtaaattggacaatttcttta 3956624  T

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Target: scaffold0086 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 20836 - 20914
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||||||||||||||||||||||| |  |||||||||||||||||| | ||||| |||||  ||||| |||||||||||    
T  20836 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaagctctataaattggacaatttttttagattttt 20914  T

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Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 34457 - 34535
Alignment:
Q  119 ttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    ||||||||||||||||||||||||||  |||||||  ||||||||| | ||||| |||||  | |||||||||||||||    
T  34457 ttttttgcaatttcttatgtaaatccctctgaattctttatataaatctctataaattggacagtttctttagattttt 34535  T

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Target: scaffold0123 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 27996 - 28051
Alignment:
Q  7 aataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 62  Q
    ||||||||||| |||| | |||| ||||||||||||||| ||||| ||||||||||    
T  27996 aataatgatgttaaaagacatgataattttactaaactaaccttatttactattgg 28051  T

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Target: scaffold0079 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 54647 - 54564
Alignment:
Q  114 ccaacttttttgcaatttcttatgtaaatcctgctgaatttcttatataaacccctatatattgggtaatttctttagattttt 197  Q
    |||| ||||||||||||| || ||||||| |   ||||||| ||||||||| ||||||| |||||  |||||||||| ||||||    
T  54647 ccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaatttctttacattttt 54564  T

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