View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2792-Insertion-13 (Length: 393)
Name: NF2792-Insertion-13
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2792-Insertion-13 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 393
Target Start/End: Original strand, 3784906 - 3785288
Alignment:
| Q |
8 |
ataggaagtacttgcagcaaattgagctcaggaagagcatttccttgcacagagggcaagaaagaattcttagcctaaaaggataaagatttttgagaat |
107 |
Q |
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| T |
3784906 |
ataggaagtacttgcagcaaattgagctcaggaagagcatttccttgcacagagggcaagaa----ttcttagcctaaa-ggataaagatttttgagaat |
3785000 |
T |
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| Q |
108 |
attagaatgacgaatgtcgaagctttccatgcataaattgcttattttgtagtctttaataatgtacttctcaagctgatattcaataacttcagcaaag |
207 |
Q |
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| T |
3785001 |
attagaatgacgaatgtcgaagctttccatgcataaattgcttattttgtagtctttaataatgtacttctcaagctgatattcaataacttcagcaaag |
3785100 |
T |
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| Q |
208 |
attttatggnnnnnnnnnnnntttaagattaa----tgcattgaaacagacgattttgtccttccttatgccgacattgtccagatagtgcacaaggaaa |
303 |
Q |
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| T |
3785101 |
a--ttatgggagagaaagagatttaagatttacatcttcactgaaacagacgattttgtccttccttatgccgaccttgtccagatagtacacaaggaaa |
3785198 |
T |
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| Q |
304 |
attaaaatgatttttatgtttcctttgctttgttataatttacagtagctataaacaatacaagtgtttttattttgattttcatctacc |
393 |
Q |
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| T |
3785199 |
attaaaatgatttttatgtttcctttgctttgttataatttacagtagctataaactatacaagtgtttttattttgattttcatctacc |
3785288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 3769376 - 3769480
Alignment:
| Q |
255 |
gattttgtccttccttatgccgacattgtccagatagtgcacaaggaaaattaaaatgatttttatgtttcctttgctttgttataatttacagtagcta |
354 |
Q |
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| T |
3769376 |
gattttgttcttccttatgtagacattgtccaatgattacacaagaaaaattaaaatgattgttatgtttcctttgctttgttatattttacagtagcta |
3769475 |
T |
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| Q |
355 |
taaac |
359 |
Q |
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| T |
3769476 |
gaaac |
3769480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 259 - 393
Target Start/End: Original strand, 1078896 - 1079035
Alignment:
| Q |
259 |
ttgtccttccttatgccgacattgtccagatagtgcacaaggaaaattaaaatgatttttatgtttcctttgctttgttataatttacagtagctataaa |
358 |
Q |
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||||||||||||||| |||||||||||| | | |||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| ||| |
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| T |
1078896 |
ttgtccttccttatgtagacattgtccagtgattacacaagaaaaattaaaatgattgttatgtttccttttctttgttatattttacagtagctagaaa |
1078995 |
T |
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| Q |
359 |
caatac-----aagtgtttttattttgattttcatctacc |
393 |
Q |
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| T |
1078996 |
ctatacaatctaagtgtttttattttcattttcatctacc |
1079035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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