View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2792-Insertion-14 (Length: 343)
Name: NF2792-Insertion-14
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2792-Insertion-14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 45863373 - 45863037
Alignment:
| Q |
8 |
aaaatccacaaccgttggaagaacaaaaaatccaatatgttgacgaattcttaagaagaacgccatgattagaacgacctagattaccaatagagttttc |
107 |
Q |
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| T |
45863373 |
aaaacccacaactgttggaagaacaaaaaatccaatatgttgacgaattcttaagaagaacgtcatgattagaacgacctaggttaccaatagagtattc |
45863274 |
T |
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| Q |
108 |
atccacattgagtttgatcacattctcatgtggatgtatcgaagaactagtcgagaaaccttatcgagattaaagtcacaaaagaccttagatgtatgtt |
207 |
Q |
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| T |
45863273 |
atccacattgagtttgatcacattctcatgtggatgtatcgaagaactagtcgagaaaccttattgagattaacgtcacaaaagaccttagatgtatgtt |
45863174 |
T |
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| Q |
208 |
tgactaatgatttaatttgattaagaattttcaaaggaaatttgttaactga-nnnnnnnnnnatcatttcaagtcttccatataaactattacgagact |
306 |
Q |
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| T |
45863173 |
tgactaatgatttaatttgattaagaattttcaaaggaaatttgttaactgatttttttttttatcatttcaagtcttccatataaactattacgagact |
45863074 |
T |
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| Q |
307 |
ttgaagtaattattgcaaaacctaacttagctgctta |
343 |
Q |
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| T |
45863073 |
ttgaagtaattattgcaaaacctaacttagctgctta |
45863037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 41415377 - 41415257
Alignment:
| Q |
107 |
catccacattgagtttgatcacattctcatgtggatgtatcgaagaa-ctagtcgagaaaccttatcgagattaaagtcacaaaagaccttagatgtatg |
205 |
Q |
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| T |
41415377 |
catccacattaagtttgatcacattctcatgtggttgtttccaagaaactagtcggggaaccttatcgagactagagtcacaaaacaccttagatgtatg |
41415278 |
T |
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| Q |
206 |
tttgactaatgatttaatttg |
226 |
Q |
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| T |
41415277 |
cttgactaaggatttaatttg |
41415257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 190
Target Start/End: Complemental strand, 39147328 - 39147228
Alignment:
| Q |
91 |
ttaccaatagagttttcatccacattgagtttgatcacattctcatgtggatgtatcgaa-gaactagtcgagaaaccttatcgagattaaagtcacaaa |
189 |
Q |
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| T |
39147328 |
ttaccaatagagctctcatccacattgattttgatcacattctcatgtgggtgtttccaaggaactagtcggggagtcttgtcgagactaaagtcacaaa |
39147229 |
T |
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| Q |
190 |
a |
190 |
Q |
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| T |
39147228 |
a |
39147228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 39125546 - 39125699
Alignment:
| Q |
47 |
ttgacgaattcttaagaagaacgccatgattagaacgacctagattaccaatagagttttcatccacattgagtttgatcacattctcatgtggatgtat |
146 |
Q |
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| T |
39125546 |
ttgacgaattcctaagaagactgccataaccagaacgacctgagttactaatagaactcccatctacattgagtttgatcatattctcaggtgggtgttt |
39125645 |
T |
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| Q |
147 |
cgaag-aactagtcgagaaaccttatcgagattaaagtcacaaaagaccttaga |
199 |
Q |
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| T |
39125646 |
ctaagaaactagtcgggaagccttgtcgagactagagtcacaaaacaccttaga |
39125699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 29978898 - 29979042
Alignment:
| Q |
91 |
ttaccaatagagttttcatccacattgagtttgatcacattctcatgtggatgtatcgaagaa-ctagtcgagaaaccttatcgagattaaagtcacaaa |
189 |
Q |
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| T |
29978898 |
ttaccaatagagctcccatgcacattgagtttcttcacaatcttatgtgggagtttccaagaaactaatcg-gagaccttgtcaagactagagtcacaaa |
29978996 |
T |
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| Q |
190 |
agaccttagatgtatgtttgactaatgatttaatttgattaagaat |
235 |
Q |
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| T |
29978997 |
ataccttagatttatgcttgattaatgatttaatttgataaagaat |
29979042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 49129019 - 49128934
Alignment:
| Q |
50 |
acgaattcttaagaagaacgccatgattagaacgacctagattaccaatagagttttcatccacattgagtttgatcacattctca |
135 |
Q |
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| T |
49129019 |
acgaatttttaagaagaccacaataatcagaacgacttaggttaccaatagatctcccatccacatttagtttgatcgcattctca |
49128934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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