View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2792-Insertion-17 (Length: 129)
Name: NF2792-Insertion-17
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2792-Insertion-17 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 30227999 - 30227888
Alignment:
| Q |
13 |
gactgcatatgttacagaaacactatgactataatataaactcttgaatacgaaatttgttgattcttcgcataatacctttactcttagaggatcacca |
112 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30227999 |
gactgcatatgttagagaaacactatgactataa-----actcttgaatacgaaatttgttgattcttcgcataatacctttactcttagaggatcacca |
30227905 |
T |
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| Q |
113 |
aattccaaagattgctt |
129 |
Q |
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||||||||||||||||| |
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| T |
30227904 |
aattccaaagattgctt |
30227888 |
T |
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Target: chr6 (Bit Score: 69; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 34687611 - 34687500
Alignment:
| Q |
13 |
gactgcatatgttacagaaacactatgactataatataaactcttgaatacgaaatttgttgattcttcgcataatacctttactcttagaggatcacca |
112 |
Q |
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|||||||||||||||||||||||||||| || | |||||| |||| |||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
34687611 |
gactgcatatgttacagaaacactatga-----atgaatactcttaaatatgaaatttgttaattcttcgcataatacctttactcgtagaggatcacca |
34687517 |
T |
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| Q |
113 |
aattccaaagattgctt |
129 |
Q |
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||||||||||||||||| |
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| T |
34687516 |
aattccaaagattgctt |
34687500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 26985562 - 26985451
Alignment:
| Q |
13 |
gactgcatatgttacagaaacactatgactataatataaactcttgaatacgaaatttgttgattcttcgcataatacctttactcttagaggatcacca |
112 |
Q |
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|||||||||||||||||||||||||||| || | |||||| |||| |||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
26985562 |
gactgcatatgttacagaaacactatga-----atgaatactcttaaatatgaaatttgttaattcttcgcataatacctttactcgtagaggatcacca |
26985468 |
T |
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| Q |
113 |
aattccaaagattgctt |
129 |
Q |
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||||||||||||||||| |
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| T |
26985467 |
aattccaaagattgctt |
26985451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 27025422 - 27025367
Alignment:
| Q |
74 |
gattcttcgcataatacctttactcttagaggatcaccaaattccaaagattgctt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27025422 |
gattcttcgcataatacctttactcttagaggatcaccaaattccaaagattgctt |
27025367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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