View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2792-Insertion-2 (Length: 982)

Name: NF2792-Insertion-2
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2792-Insertion-2
NF2792-Insertion-2
[»] chr6 (7 HSPs)
chr6 (7-301)||(10541674-10541967)
chr6 (561-850)||(10542801-10543081)
chr6 (843-982)||(10543107-10543245)
chr6 (850-952)||(6389694-6389795)
chr6 (516-561)||(10542733-10542778)
chr6 (11-59)||(10535969-10536017)
chr6 (850-901)||(8365576-8365627)
[»] chr8 (1 HSPs)
chr8 (850-952)||(39820380-39820481)
[»] chr7 (2 HSPs)
chr7 (14-59)||(32474892-32474937)
chr7 (870-901)||(19206021-19206052)
[»] chr4 (3 HSPs)
chr4 (852-891)||(19262977-19263016)
chr4 (858-901)||(19482627-19482670)
chr4 (863-949)||(7012031-7012115)
[»] chr3 (1 HSPs)
chr3 (850-901)||(14223910-14223960)
[»] chr1 (1 HSPs)
chr1 (850-901)||(9630637-9630688)
[»] chr5 (1 HSPs)
chr5 (862-952)||(26205767-26205856)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-147; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 10541674 - 10541967
Alignment:
Q  7 aaatagtggaaagggtacacttttccatttatgtgatgatgttattcaacaagtgataaccagtctcatatcatttgttccattattactagtttgttag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10541674 aaatagtggaaagggtacacttttccatttatgtgatgatgttattcaacaagtgataaccagtctcatatcatttgttccattattactagtttgttag 10541773  T
Q  107 tgtcatttcggatactagacacgcctttaatctgaagtgtcaatgcaatagagttttttgataactcattgg-aaaaacaacttttacacaaacaagtaa 205  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  10541774 tgtcatttcggatactagacacgcctttcatctgaagtgtcaatgcaatagagtttcttgataactcattggaaaaaacaacttatacacaaacaagtaa 10541873  T
Q  206 acaataatgccaatttaaaattcataatgtacaagtgttgggtgctcaagtaaacaataatgccaaattaaaattcataatgcaatagagtttctt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  10541874 acaataatgccaatttaaaattcataatgtacaagtgttgggtgctcaagtaaacaataatgccaaattaaaattcataat--aatagagtttctt 10541967  T

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Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 561 - 850
Target Start/End: Original strand, 10542801 - 10543081
Alignment:
Q  561 aatccctctgttataatgaagtattcaaaatccctcttttatttcaatattcaaaggttagctgtttagagggtcattaacctattctttttgtacatta 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  10542801 aatccctctgttataatgaagtattcaaaatccctcttttatttcaatattcaaaggttagctgtctagagtgtcattaacctattctttttgtacatta 10542900  T
Q  661 agaagaaaccaaacactaaaccattgataagttgataacagcagaaaacagaactccatagataaatattta-ccaagtgttaattatgcaaataaacct 759  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||        ||||| |  ||    
T  10542901 agaagaaaccaaacactaaaccattgataagttgataacagcagaaaacagaactctatagataaatatttacccaagtgt--------caaatta--ct 10542990  T
Q  760 accatatcatcatcatatcttaatgtaatttgtagtgcatcaatcaaatactccctaattattacaaactaacatcatccttccatcacat 850  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10542991 accatatcatcatcatctcttaatgtaatttgtagtgcatcaatcaaatactccctaattattacaaactaacatcatccttccatcacat 10543081  T

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Target: chr6; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 843 - 982
Target Start/End: Original strand, 10543107 - 10543245
Alignment:
Q  843 catcacatatgaagcacgaacacagacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataatttcagcgtaat 942  Q
    |||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| |||| ||||||    
T  10543107 catcacatatgaagcatgaacacggacaccagacacgacacgaacaccaacacgccaacttcgataaaattttctaaaaatgacataa-ttcaacgtaat 10543205  T
Q  943 cataggtgtcaatgtcagacacacctaatctcagaagtgt 982  Q
    ||| ||||||  ||||||||||||||||||||||||||||    
T  10543206 catgggtgtcggtgtcagacacacctaatctcagaagtgt 10543245  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 850 - 952
Target Start/End: Original strand, 6389694 - 6389795
Alignment:
Q  850 tatgaagcacgaacacagacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataatttcagcgtaatcataggt 949  Q
    ||||||||||| ||||||||||| ||||||||||||||||  ||||||||||   ||||| | |||  |||||||| ||||||| || ||||||||||||    
T  6389694 tatgaagcacggacacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaatgatataattt-agtgtaatcataggt 6389792  T
Q  950 gtc 952  Q
    |||    
T  6389793 gtc 6389795  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 516 - 561
Target Start/End: Original strand, 10542733 - 10542778
Alignment:
Q  516 atcaaaatcgaaggaacaaagttgtttgactgcaacaacttcatga 561  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||    
T  10542733 atcaaaatcgaaggaacaaagttgtttgaccacaacaacttcatga 10542778  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 10535969 - 10536017
Alignment:
Q  11 agtggaaagggtacacttttccatttatgtgatgatgttattcaacaag 59  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||||||||    
T  10535969 agtgggaagggtacacttctccatttatgtgatgatgtcattcaacaag 10536017  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 850 - 901
Target Start/End: Complemental strand, 8365627 - 8365576
Alignment:
Q  850 tatgaagcacgaacacagacaccagacacgacacggacaccaacacgccgac 901  Q
    ||||||||||| | || |||||||||||||||||||||||  ||||||||||    
T  8365627 tatgaagcacggatacggacaccagacacgacacggacactgacacgccgac 8365576  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 850 - 952
Target Start/End: Original strand, 39820380 - 39820481
Alignment:
Q  850 tatgaagcacgaacacagacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataatttcagcgtaatcataggt 949  Q
    ||||||||||| ||||||||||| |||||||||| |||||| |||||| |||    |||| | |||  |||||||| ||||||| || ||||||||||||    
T  39820380 tatgaagcacggacacagacaccggacacgacacagacaccgacacgctgacccgtataataatttgagaaaatgatataattt-agtgtaatcataggt 39820478  T
Q  950 gtc 952  Q
    |||    
T  39820479 gtc 39820481  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 32474892 - 32474937
Alignment:
Q  14 ggaaagggtacacttttccatttatgtgatgatgttattcaacaag 59  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  32474892 ggaaagggtacacttctccatttgtgtgatgatgtcattcaacaag 32474937  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 870 - 901
Target Start/End: Original strand, 19206021 - 19206052
Alignment:
Q  870 accagacacgacacggacaccaacacgccgac 901  Q
    ||||||||||||||||||||||||||||||||    
T  19206021 accagacacgacacggacaccaacacgccgac 19206052  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 852 - 891
Target Start/End: Complemental strand, 19263016 - 19262977
Alignment:
Q  852 tgaagcacgaacacagacaccagacacgacacggacacca 891  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  19263016 tgaagcacgaacacagacaccggacacgacactgacacca 19262977  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 858 - 901
Target Start/End: Original strand, 19482627 - 19482670
Alignment:
Q  858 acgaacacagacaccagacacgacacggacaccaacacgccgac 901  Q
    |||||||||||||||||||||||||| |||||  ||||||||||    
T  19482627 acgaacacagacaccagacacgacacagacactgacacgccgac 19482670  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 949
Target Start/End: Original strand, 7012031 - 7012115
Alignment:
Q  863 cacagacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataatttcagcgtaatcataggt 949  Q
    ||||||||| ||||| |||||||||||| ||||||||||  |||||| | |||  ||||||||||||| ||||| || |||||||||    
T  7012031 cacagacac-agacaggacacggacaccgacacgccgacaccgataataatttgagaaaatgacataa-ttcagtgtgatcataggt 7012115  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 850 - 901
Target Start/End: Complemental strand, 14223960 - 14223910
Alignment:
Q  850 tatgaagcacgaacacagacaccagacacgacacggacaccaacacgccgac 901  Q
    ||||||||||||||||||||| | |||||||||| |||||| ||||||||||    
T  14223960 tatgaagcacgaacacagaca-cggacacgacacagacaccgacacgccgac 14223910  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 850 - 901
Target Start/End: Complemental strand, 9630688 - 9630637
Alignment:
Q  850 tatgaagcacgaacacagacaccagacacgacacggacaccaacacgccgac 901  Q
    ||||||||||| | ||||||||||||||| ||||||||||  ||||||||||    
T  9630688 tatgaagcacggatacagacaccagacacaacacggacactgacacgccgac 9630637  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 862 - 952
Target Start/End: Complemental strand, 26205856 - 26205767
Alignment:
Q  862 acacagacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataatttcagcgtaatcataggtgtc 952  Q
    |||| |||||| |||| |||| ||||||  ||||| |||   ||||||||||||  ||||||||||||| ||||| |||||||||||||||    
T  26205856 acacggacaccggacatgacatggacactgacacgtcgataccgataaaattttgagaaaatgacataa-ttcagtgtaatcataggtgtc 26205767  T

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