View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2792-Insertion-4 (Length: 961)

Name: NF2792-Insertion-4
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2792-Insertion-4
NF2792-Insertion-4
[»] chr6 (26 HSPs)
chr6 (8-906)||(34436172-34437062)
chr6 (8-257)||(34443559-34443809)
chr6 (635-874)||(12339854-12340091)
chr6 (681-874)||(26592262-26592454)
chr6 (673-810)||(10864798-10864931)
chr6 (681-906)||(32251806-32252027)
chr6 (644-837)||(2580286-2580475)
chr6 (772-862)||(21018789-21018879)
chr6 (777-874)||(17398877-17398973)
chr6 (711-831)||(31223332-31223450)
chr6 (711-863)||(11655939-11656090)
chr6 (771-863)||(13909453-13909545)
chr6 (777-863)||(6834362-6834448)
chr6 (771-861)||(24983444-24983534)
chr6 (787-868)||(2423663-2423744)
chr6 (815-872)||(12438768-12438825)
chr6 (777-862)||(13087565-13087650)
chr6 (721-757)||(21478016-21478052)
chr6 (787-870)||(31885590-31885673)
chr6 (363-393)||(201535-201565)
chr6 (778-844)||(16431056-16431122)
chr6 (360-398)||(24089488-24089526)
chr6 (818-879)||(7763973-7764034)
chr6 (787-863)||(23142712-23142788)
chr6 (790-863)||(27367429-27367502)
chr6 (790-863)||(27457776-27457849)
[»] chr7 (30 HSPs)
chr7 (638-873)||(29121409-29121641)
chr7 (638-896)||(7929957-7930214)
chr7 (649-876)||(14063219-14063457)
chr7 (649-876)||(14373247-14373485)
chr7 (652-868)||(34000346-34000561)
chr7 (672-747)||(31327341-31327415)
chr7 (691-863)||(28202310-28202480)
chr7 (691-863)||(42935616-42935789)
chr7 (684-771)||(7322333-7322420)
chr7 (638-757)||(47499870-47499993)
chr7 (711-860)||(3178208-3178355)
chr7 (711-849)||(762136-762271)
chr7 (691-863)||(21390252-21390423)
chr7 (782-874)||(25530980-25531072)
chr7 (690-757)||(27557074-27557140)
chr7 (777-863)||(9786030-9786116)
chr7 (644-755)||(13906607-13906720)
chr7 (795-873)||(25521641-25521718)
chr7 (676-757)||(27570086-27570167)
chr7 (775-844)||(15464718-15464787)
chr7 (704-757)||(21105741-21105794)
chr7 (787-836)||(39452396-39452445)
chr7 (771-863)||(26974062-26974157)
chr7 (681-757)||(35016374-35016450)
chr7 (691-755)||(40076276-40076340)
chr7 (771-874)||(17783081-17783184)
chr7 (779-874)||(30107160-30107255)
chr7 (775-822)||(47254956-47255003)
chr7 (772-810)||(25571456-25571494)
chr7 (771-860)||(21759988-21760077)
[»] chr4 (31 HSPs)
chr4 (681-872)||(23915421-23915609)
chr4 (638-887)||(17121140-17121387)
chr4 (683-875)||(39157861-39158051)
chr4 (672-874)||(50442924-50443125)
chr4 (690-771)||(13138640-13138721)
chr4 (646-759)||(3068035-3068150)
chr4 (796-896)||(11024857-11024957)
chr4 (777-865)||(42517636-42517724)
chr4 (638-757)||(40445215-40445334)
chr4 (706-868)||(49428337-49428497)
chr4 (674-771)||(23313372-23313472)
chr4 (777-863)||(38405102-38405188)
chr4 (787-868)||(3929242-3929323)
chr4 (771-835)||(5841455-5841519)
chr4 (771-863)||(11907599-11907691)
chr4 (681-831)||(21761029-21761175)
chr4 (787-863)||(28500891-28500967)
chr4 (711-858)||(47773024-47773169)
chr4 (782-877)||(9028637-9028731)
chr4 (722-863)||(33790731-33790870)
chr4 (711-753)||(40546337-40546379)
chr4 (691-755)||(42617009-42617073)
chr4 (771-863)||(52859799-52859891)
chr4 (684-755)||(3929166-3929237)
chr4 (775-870)||(10215157-10215252)
chr4 (771-858)||(17114469-17114556)
chr4 (726-757)||(40383246-40383277)
chr4 (776-863)||(46396883-46396970)
chr4 (674-747)||(34321812-34321886)
chr4 (359-397)||(54779182-54779220)
chr4 (772-865)||(7061662-7061755)
[»] chr3 (26 HSPs)
chr3 (683-810)||(54225883-54226007)
chr3 (771-877)||(47825088-47825194)
chr3 (691-863)||(37695660-37695831)
chr3 (787-877)||(25090034-25090124)
chr3 (771-874)||(47825630-47825733)
chr3 (771-863)||(24569094-24569186)
chr3 (777-873)||(39931664-39931760)
chr3 (690-753)||(30251361-30251424)
chr3 (702-879)||(49215344-49215522)
chr3 (771-857)||(51837959-51838045)
chr3 (683-863)||(19822955-19823132)
chr3 (715-860)||(37772961-37773104)
chr3 (638-699)||(29778712-29778773)
chr3 (711-863)||(36476555-36476705)
chr3 (692-753)||(53863763-53863824)
chr3 (771-863)||(30190654-30190746)
chr3 (771-863)||(37311979-37312071)
chr3 (771-863)||(43253857-43253949)
chr3 (775-831)||(48893773-48893829)
chr3 (676-768)||(52028404-52028496)
chr3 (777-863)||(8679048-8679134)
chr3 (777-863)||(53560252-53560338)
chr3 (771-837)||(54477479-54477545)
chr3 (777-858)||(29677005-29677085)
chr3 (771-836)||(30711102-30711167)
chr3 (672-753)||(47085730-47085811)
[»] chr2 (28 HSPs)
chr2 (638-831)||(30996250-30996442)
chr2 (654-757)||(23492786-23492888)
chr2 (711-876)||(42363716-42363878)
chr2 (778-885)||(38763584-38763691)
chr2 (721-885)||(33729887-33730047)
chr2 (691-863)||(43410377-43410547)
chr2 (711-863)||(39691461-39691611)
chr2 (672-756)||(15873577-15873661)
chr2 (740-858)||(31976349-31976464)
chr2 (664-863)||(45235504-45235702)
chr2 (780-874)||(34437982-34438076)
chr2 (711-837)||(37322400-37322523)
chr2 (781-837)||(11367118-11367174)
chr2 (771-863)||(16805910-16806002)
chr2 (771-863)||(16845191-16845283)
chr2 (814-874)||(30832098-30832158)
chr2 (706-858)||(14523369-14523519)
chr2 (674-753)||(38449218-38449297)
chr2 (690-752)||(5050710-5050772)
chr2 (766-863)||(16463713-16463810)
chr2 (794-863)||(19937729-19937798)
chr2 (737-836)||(33406993-33407089)
chr2 (681-726)||(38763503-38763548)
chr2 (815-870)||(23492978-23493033)
chr2 (777-839)||(9246023-9246085)
chr2 (777-863)||(17695365-17695451)
chr2 (775-808)||(29189970-29190003)
chr2 (790-863)||(31448685-31448758)
[»] chr8 (36 HSPs)
chr8 (646-759)||(27882934-27883049)
chr8 (646-759)||(28023114-28023229)
chr8 (672-874)||(3117004-3117205)
chr8 (646-757)||(27966145-27966258)
chr8 (646-756)||(27870768-27870880)
chr8 (644-770)||(8740881-8741009)
chr8 (672-854)||(5878993-5879174)
chr8 (780-874)||(8979136-8979230)
chr8 (772-873)||(11649638-11649739)
chr8 (655-757)||(12899885-12899989)
chr8 (762-863)||(42972503-42972604)
chr8 (781-860)||(7703154-7703233)
chr8 (690-831)||(11622915-11623053)
chr8 (771-862)||(31271050-31271141)
chr8 (798-896)||(8741083-8741181)
chr8 (777-857)||(7672342-7672422)
chr8 (771-863)||(9300108-9300200)
chr8 (711-755)||(17654534-17654578)
chr8 (798-874)||(28073531-28073607)
chr8 (715-757)||(27976629-27976671)
chr8 (715-757)||(28033898-28033940)
chr8 (360-398)||(29855191-29855229)
chr8 (673-757)||(28072474-28072559)
chr8 (798-882)||(29806257-29806341)
chr8 (813-872)||(28072123-28072182)
chr8 (690-753)||(44225776-44225839)
chr8 (777-863)||(1875587-1875673)
chr8 (711-757)||(9015726-9015772)
chr8 (690-748)||(31231680-31231738)
chr8 (672-757)||(34280992-34281075)
chr8 (772-849)||(136806-136883)
chr8 (672-757)||(2598335-2598419)
chr8 (781-845)||(9795706-9795771)
chr8 (777-834)||(18842396-18842453)
chr8 (681-722)||(27134490-27134531)
chr8 (798-863)||(36967417-36967482)
[»] chr5 (19 HSPs)
chr5 (672-874)||(39213277-39213481)
chr5 (796-879)||(9637873-9637956)
chr5 (796-873)||(40955848-40955925)
chr5 (640-757)||(17967080-17967199)
chr5 (672-759)||(5731708-5731794)
chr5 (691-861)||(6315771-6315939)
chr5 (777-863)||(1248596-1248682)
chr5 (691-836)||(6753980-6754123)
chr5 (771-865)||(7827916-7828010)
chr5 (672-757)||(28225093-28225178)
chr5 (771-863)||(4818580-4818672)
chr5 (771-837)||(27580629-27580695)
chr5 (771-863)||(8725001-8725093)
chr5 (691-755)||(19929897-19929961)
chr5 (771-863)||(27542824-27542916)
chr5 (771-863)||(40530216-40530308)
chr5 (691-755)||(41496031-41496095)
chr5 (771-862)||(31655082-31655173)
chr5 (638-716)||(33537463-33537543)
[»] chr1 (24 HSPs)
chr1 (721-872)||(49176897-49177047)
chr1 (646-896)||(44122132-44122369)
chr1 (649-767)||(10587934-10588054)
chr1 (733-860)||(30902959-30903088)
chr1 (711-863)||(7759186-7759336)
chr1 (706-858)||(40144849-40144999)
chr1 (762-863)||(45331361-45331462)
chr1 (711-837)||(7957302-7957424)
chr1 (696-863)||(32825989-32826155)
chr1 (704-879)||(11642133-11642302)
chr1 (777-863)||(917059-917145)
chr1 (777-863)||(30754938-30755024)
chr1 (706-863)||(39864077-39864232)
chr1 (798-874)||(15444467-15444543)
chr1 (802-874)||(50071262-50071334)
chr1 (777-863)||(26093429-26093515)
chr1 (771-863)||(31978649-31978741)
chr1 (711-755)||(33733365-33733409)
chr1 (777-860)||(34031527-34031610)
chr1 (702-757)||(39395228-39395283)
chr1 (771-837)||(15699151-15699217)
chr1 (777-863)||(23168990-23169076)
chr1 (794-863)||(16395044-16395113)
chr1 (706-755)||(37506090-37506139)
[»] scaffold0056 (2 HSPs)
scaffold0056 (777-876)||(71827-71926)
scaffold0056 (702-771)||(71426-71495)
[»] scaffold0018 (1 HSPs)
scaffold0018 (777-863)||(136031-136117)
[»] scaffold0279 (1 HSPs)
scaffold0279 (690-757)||(11949-12015)
[»] scaffold1391 (1 HSPs)
scaffold1391 (777-863)||(1811-1897)
[»] scaffold0302 (1 HSPs)
scaffold0302 (774-863)||(16130-16219)
[»] scaffold0182 (1 HSPs)
scaffold0182 (787-860)||(20350-20423)
[»] scaffold0330 (1 HSPs)
scaffold0330 (702-865)||(5354-5513)
[»] scaffold0021 (1 HSPs)
scaffold0021 (777-870)||(126206-126299)


Alignment Details
Target: chr6 (Bit Score: 707; Significance: 0; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 8 - 906
Target Start/End: Complemental strand, 34437062 - 34436172
Alignment:
Q  8 aacagttccggtttccatgaggaaaacttctgagatctgagagtggatatggtagattaggattttttgggtatgcatagtctgaagaaatgtttttgtt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34437062 aacagttccggtttccatgaggaaaacttctgagatctgagagtggatatggtagattaggattttttgggtatgcatagtcagaagaaatgtttttgtt 34436963  T
Q  108 aactcctgtttgtatgtaagatccatcagtgacgtattttattttagtgtcctcgtctgtgtactctaaattttctggaccaccacaatcaatgcttatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34436962 aactcctgtttgtatgtaagatccatcagtgacgtattttattttagtgtcctcgtctgtgtactcaaaattttctggaccaccacaatcaatgcttatg 34436863  T
Q  208 aagcctgaatagaaagtaaattagattgagaaataaaaatgattgaatgttacctcataaaagtatgacgtatcaacacgaacatagacaccaaacatga 307  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||||||||||||    
T  34436862 aagcctgaatagaaagtaaattagattgagaaatgaaaatgattgaatgttaccacatagaagtatgaagtatcaacacaaacatagacaccaaacatga 34436763  T
Q  308 cattgacaaatcgattacacctgccgataataattttgnnnnnnnnnnnnntttgaatgtaatcacatgtgtcagtgtcatgttggtgtcatgcgggtgt 407  Q
    ||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||| |||||||||||||||               
T  34436762 cattgacaaatcgattacacctgccgataataattttgaaaaatgaaaaagtttgaatgtaatcacatgtgtcggtgtcatgttggtgt----------- 34436674  T
Q  408 tgttaaacacgtgttggacattgtagagactttcaatttgaaatgtctgtactaaatcatagttgttttcttctttttcaataaaaattttaaaacaact 507  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  34436673 tgttaaacacgtgacggacattgtagagactttcaatttcaaatgtctgtactaaatcgtagttgttttcttctttttcaataaaatttttaaaacaact 34436574  T
Q  508 tatggataattattgcctagataaatttatgagatttgatatgaatcaagttatttacccaaaagagtatcctaagtaaaactgagataagaattgcttg 607  Q
    ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34436573 tatggataattattgcccagagaaatttatgagatttgatattaatcaagttatttacccaaaagagtatcctaagtaaaactgagataagaattgcttg 34436474  T
Q  608 aaaccatgatactaaaaaattagtaccccatctcataataggtgtcctctttactatttttctatctcaaatcatttgtcccttttataatacaaataca 707  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  34436473 aaaccatgatactaaaaaattactcccccatctcataataggtgtcctctttactatttttctatctcaaattatttgtcccttctataatacaaataca 34436374  T
Q  708 acttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaa 807  Q
    || ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  34436373 acgtttattattcttttccattaacataccattatttattgcatttcaataacctaactactcctccattaactataattaataagagtattttagtaaa 34436274  T
Q  808 tgacatatattttacaattaaaatcaacactactaata---atttacttaataatcgtgtaaaactcaaaagagatacctattatgggacggttaaagta 904  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34436273 tgacatatattttacaattaaaatcaacactactaataattatttacttaataatcgtgtaaaactcaaaagagatacctattgtgggacggttaaagta 34436174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 34443809 - 34443559
Alignment:
Q  8 aacagttccggtttccatgaggaaaacttctgagatctgagagtggatatggtagattaggattttttgggtatgcatagtctgaagaaatgtttttgtt 107  Q
    ||||||| |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  | |||||||||| ||||    
T  34443809 aacagtttcggtttccttgaggaaaacttctgagatctgagaatgtatatggtagattaggattttttgggtatgcatagttagcagaaatgtttctgtt 34443710  T
Q  108 aactcctgtttgtatgtaagatccatcagtgacgtattttattttagtgtcctcgtctgtgtactctaaattttctggaccaccacaatcaatgcttatg 207  Q
    || ||||||||||||||||| |||||| ||| |||||||||||| |||  | || ||||||||||| |||||| ||||||||||||||||||||||||||    
T  34443709 aagtcctgtttgtatgtaagctccatctgtgccgtattttatttcagttacatcatctgtgtactcaaaatttgctggaccaccacaatcaatgcttatg 34443610  T
Q  208 aagcctgaatagaaag-taaattagattgagaaataaaaatgattgaatgt 257  Q
    ||||||||||||||||   || ||||||||||||| |||||||||||||||    
T  34443609 aagcctgaatagaaagaccaactagattgagaaatgaaaatgattgaatgt 34443559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 635 - 874
Target Start/End: Original strand, 12339854 - 12340091
Alignment:
Q  635 ccatctcataataggtgtcctctttactatttttctat--ctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaac 732  Q
    ||||||||||||| ||||  | |||||||||||||| |  || |||| |||| |||||||||||||||||||||||||||||||||||||||| | |||     
T  12339854 ccatctcataataagtgtattttttactatttttctttggcttaaattatttttcccttttataatacaaatacaacttttattattcttttctactaat 12339953  T
Q  733 atacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatc 832  Q
     |||| ||||||||| ||||||||| | ||||||||||| |   ||||||||| ||||||  || ||||||||||| | | ||| ||||  |||||||||    
T  12339954 ctacctttatttattacatttcaatcatctaactactccgc---taactataattaataaaagtgttttagtaaattaaacata-tttatcattaaaatc 12340049  T
Q  833 aacactactaataatttacttaataatcgtgtaaaactcaaa 874  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  12340050 aacactactaatcattttcttaataatcgtgtaaaactcaaa 12340091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 681 - 874
Target Start/End: Original strand, 26592262 - 26592454
Alignment:
Q  681 atttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaac 780  Q
    |||||||| ||||||||||  |||||||| |||||| ||||||  || ||||||||||||||||||||||||||||| | || |  | |  | || ||||    
T  26592262 atttgtccattttataatatcaatacaacatttatttttctttatcaataacatacccttatttattgcatttcaatcatct-ataattatttcactaac 26592360  T
Q  781 tataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaa 874  Q
    |||||  || |||||||| ||||||||||| | | ||||||| ||||||||||| | || |||| |||| ||||||||| |  |||||||||||    
T  26592361 tataataaacaagggtatattagtaaatgatacacattttaccattaaaatcaatattattaatcatttccttaataattgcctaaaactcaaa 26592454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 673 - 810
Target Start/End: Original strand, 10864798 - 10864931
Alignment:
Q  673 ctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcct 772  Q
    ||||||| |||| ||| ||||||| ||| |||||||  ||||||||||||| ||| |||||||||||||||||||| |||||||| | |||||||   ||    
T  10864798 ctcaaatgatttttccattttatactaccaatacaatatttattattcttt-ccactaacatacccttatttattgtatttcaattatctaacta---ct 10864893  T
Q  773 ccattaactataactaataagggtattttagtaaatga 810  Q
     |||||||||||| ||||||||||  | ||||||||||    
T  10864894 tcattaactataattaataagggtgctatagtaaatga 10864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 681 - 906
Target Start/End: Original strand, 32251806 - 32252027
Alignment:
Q  681 atttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaac 780  Q
    ||||||| |||||| |||| ||||||||| ||||||||||||||| |  ||||||| | |||||||||||||| ||| | ||||||| | | |   ||||    
T  32251806 atttgtctcttttacaatataaatacaacgtttattattcttttctaccaacatacacctatttattgcattttaatcatctaactatttcgc---taac 32251902  T
Q  781 tataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaagagat 880  Q
    || ||  ||||| ||| |||||||| ||||   ||||||| | ||| ||||||||| || |||| ||||  ||||||||||| |||||| ||||| |||     
T  32251903 taaaatgaataatggtgttttagtacatgaaccatatttttccattgaaatcaacattattaatcatttttttaataatcgt-taaaacccaaaatagac 32252001  T
Q  881 acctattatgggacggttaaagtact 906  Q
    | ||||| || ||||| | |||||||    
T  32252002 atctattttgagacggatgaagtact 32252027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 644 - 837
Target Start/End: Original strand, 2580286 - 2580475
Alignment:
Q  644 aataggtgtcctctttactatttttct--atctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacataccctta 741  Q
    ||||| |||||||||||||||||||||   |||||||| ||||||| | |||||||||  |||| ||  |||||||||||||| |||||| |||| ||||    
T  2580286 aatagatgtcctctttactatttttctcagtctcaaattatttgtcac-tttataatatcaatataatatttattattctttt-cattaaaatactctta 2580383  T
Q  742 tttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacac 837  Q
     | ||||||||||||||| | || ||   | | || |||||||  ||||||| |||||||| ||||||| || |||||||  ||||||||||||||    
T  2580384 -tcattgcatttcaataatccaatta---cactataaactatagttaataagagtattttaataaatgaaatttattttatcattaaaatcaacac 2580475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 772 - 862
Target Start/End: Original strand, 21018789 - 21018879
Alignment:
Q  772 tccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgt 862  Q
    ||||||||||||||||||||| ||| ||||||||||| | | ||||||||  ||||||||||| | || |||| |||| ||||||||||||    
T  21018789 tccattaactataactaataatggtgttttagtaaataatacatattttatcattaaaatcaatagtagtaatcatttccttaataatcgt 21018879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 777 - 874
Target Start/End: Complemental strand, 17398973 - 17398877
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaa 874  Q
    ||||||||| ||||||||   ||||||||||||| | ||||||||  |||||||||| ||||| |||||||||  |||||||| ||||||||||||||    
T  17398973 taactataattaataaggcgtttttagtaaatgaaacatattttatcattaaaatca-cactattaataatttctttaataatagtgtaaaactcaaa 17398877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 711 - 831
Target Start/End: Complemental strand, 31223450 - 31223332
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatga 810  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||||| | |||| |  ||| |  | |||||||| |||||| ||| |||||||||||||    
T  31223450 tttattattcttttccactaacatacacttatttattgcaattcaatcatctaaatgttccac--taaactataattaataaaggtgttttagtaaatga 31223353  T
Q  811 catatattttacaattaaaat 831  Q
     | | ||||||| ||||||||    
T  31223352 aacacattttaccattaaaat 31223332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 711 - 863
Target Start/End: Complemental strand, 11656090 - 11655939
Alignment:
Q  711 tttattattcttttcc-attaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatg 809  Q
    ||||||||| |||||| ||||  |||||||||||||||| ||||||   | ||   |||| ||||| |||||| || |||||||||| ||||||||||||    
T  11656090 tttattatttttttcccattattatacccttatttattgaatttcatccaactt--tactactccactaactacaattaataagggtgttttagtaaatg 11655993  T
Q  810 acatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||   ||||||| || ||||||||||| | |||| |||| |||||||| ||||    
T  11655992 acactaattttaccatcaaaatcaacacaattaatcattttcttaataaccgtg 11655939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 863
Target Start/End: Original strand, 13909453 - 13909545
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || ||||||||||||||||||||||| ||   ||||||| ||| ||||||||||   |||| |||| |||||||||||||    
T  13909453 ctccactaactacaattaataagggtattttagtaaatgtcactaattttaccattgaaatcaacacatttaatcatttccttaataatcgtg 13909545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 777 - 863
Target Start/End: Complemental strand, 6834448 - 6834362
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||| |||||| ||| ||||||||||||| ||  |||| || || ||||||||||| | |||| |||| |||||||||||||    
T  6834448 taactataattaataaaggtgttttagtaaatgatattaatttgactatcaaaatcaacacaattaattattttcttaataatcgtg 6834362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 771 - 861
Target Start/End: Complemental strand, 24983534 - 24983444
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcg 861  Q
    ||||| |||||| || |||||||||| |||||||||||||||   ||||||| ||| |||||||| | |||||| |||| ||||| |||||    
T  24983534 ctccactaactacaattaataagggtgttttagtaaatgacactaattttaccattgaaatcaactcaactaatcatttccttaagaatcg 24983444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 868
Target Start/End: Original strand, 2423663 - 2423744
Alignment:
Q  787 taataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaa 868  Q
    ||||||| || ||||| ||||||| | ||||||||| ||||||||||||| || |||| |||| || ||||||| |||||||    
T  2423663 taataagagtgttttaataaatgatacatattttaccattaaaatcaacaatattaatcattttctgaataatcatgtaaaa 2423744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 815 - 872
Target Start/End: Complemental strand, 12438825 - 12438768
Alignment:
Q  815 tattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactca 872  Q
    |||||||| ||||||||||| |||| | || |||| ||||||||||||||||||||||    
T  12438825 tattttaccattaaaatcaatactattcatcattttcttaataatcgtgtaaaactca 12438768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 777 - 862
Target Start/End: Original strand, 13087565 - 13087650
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgt 862  Q
    ||||||||| |||||||| | ||||||||||||| ||  ||||||| ||| |||||||||| | |||| | || ||||||||||||    
T  13087565 taactataattaataaggatgttttagtaaatgatattaattttaccattgaaatcaacacaattaatcactttcttaataatcgt 13087650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 721 - 757
Target Start/End: Complemental strand, 21478052 - 21478016
Alignment:
Q  721 ttttccattaacatacccttatttattgcatttcaat 757  Q
    |||||||||||||||| ||||||||||||||||||||    
T  21478052 ttttccattaacatactcttatttattgcatttcaat 21478016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 870
Target Start/End: Complemental strand, 31885673 - 31885590
Alignment:
Q  787 taataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaact 870  Q
    |||||||| | ||||||||||| | | |||||||||||||||||| || | ||||||| | ||| ||||||| ||| |||||||    
T  31885673 taataaggatgttttagtaaattaaacatattttacaattaaaattaatattactaatcaattatttaataaccgtataaaact 31885590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 363 - 393
Target Start/End: Original strand, 201535 - 201565
Alignment:
Q  363 aatgtaatcacatgtgtcagtgtcatgttgg 393  Q
    |||||||||||||||||||||||||||||||    
T  201535 aatgtaatcacatgtgtcagtgtcatgttgg 201565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 778 - 844
Target Start/End: Original strand, 16431056 - 16431122
Alignment:
Q  778 aactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaat 844  Q
    ||||| || ||||||| |||||||||||||||||| | |||||||  ||||| ||||||||| ||||    
T  16431056 aactacaagtaataagagtattttagtaaatgacacaaattttacctttaaactcaacactattaat 16431122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 24089488 - 24089526
Alignment:
Q  360 ttgaatgtaatcacatgtgtcagtgtcatgttggtgtca 398  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  24089488 ttgaatgtaattacatgtgttagtgtcatgttggtgtca 24089526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 818 - 879
Target Start/End: Original strand, 7763973 - 7764034
Alignment:
Q  818 tttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaagaga 879  Q
    ||||| ||| ||||||||| |||| || |||| ||||| || ||||||||||||||||||||    
T  7763973 tttaccatttaaatcaacattactgatcattttcttaagaaccgtgtaaaactcaaaagaga 7764034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 787 - 863
Target Start/End: Original strand, 23142712 - 23142788
Alignment:
Q  787 taataagggtattttagtaaatgaca-tatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||||||||| |||||||||||| || ||| |||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  23142712 taataagggtgttttagtaaatgccactat-ttttaccattgaaatcaacacaattaatcattttcttaataatcgtg 23142788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 790 - 863
Target Start/End: Complemental strand, 27367502 - 27367429
Alignment:
Q  790 taagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||| ||||||||||||  ||  ||||||||| |||||||||||| | |||| ||||  ||||||||||||    
T  27367502 taagggtgttttagtaaatgcaattaattttacaactaaaatcaacacaattaatcatttctttaataatcgtg 27367429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 790 - 863
Target Start/End: Complemental strand, 27457849 - 27457776
Alignment:
Q  790 taagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||| ||||||||||||  ||  ||||||||| |||||||||||| | |||| ||||  ||||||||||||    
T  27457849 taagggtgttttagtaaatgcaattaattttacaactaaaatcaacacaattaatcatttctttaataatcgtg 27457776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 4e-50; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 638 - 873
Target Start/End: Original strand, 29121409 - 29121641
Alignment:
Q  638 tctcataataggtgtcctctttactatttttctatctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacc 737  Q
    ||||| |||| |||||||||||||||||||||  |||||||| |||||||||||||| ||||| |||||||| |||| |||| ||||||| ||||||| |    
T  29121409 tctcacaatacgtgtcctctttactatttttccgtctcaaattatttgtcccttttacaatactaatacaacatttactatttttttccactaacataac 29121508  T
Q  738 cttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacac 837  Q
    |||||||||||||||||||| | |||||||   ||||| |||| |||| |||| ||||| ||||||||||| | | ||||||||| |||||||||||||     
T  29121509 cttatttattgcatttcaatcatctaacta---ctccactaacaataattaatgagggtgttttagtaaattagacatattttaccattaaaatcaacaa 29121605  T
Q  838 tactaataatttacttaataatcgtgtaaaactcaa 873  Q
    || | || |||| |||| ||| ||||||||||||||    
T  29121606 tattgatcatttccttagtaaccgtgtaaaactcaa 29121641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 638 - 896
Target Start/End: Original strand, 7929957 - 7930214
Alignment:
Q  638 tctcataataggtgtcctctttactatttttctat--ctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacata 735  Q
    ||||| ||||||||||||||||||||||||||| |  ||||| | |||||||||||||| ||||| |||||||| ||||||||| |||||||  |||| |    
T  7929957 tctcaaaataggtgtcctctttactatttttctttgtctcaatttatttgtcccttttacaatactaatacaacatttattattattttccaccaacaga 7930056  T
Q  736 cccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaac 835  Q
    ||| ||||| |||||||| ||| | |||||||    | || ||||||||| |||||||||| |||||||||||||   ||||||| | ||| ||||||||    
T  7930057 cccctatttcttgcattttaatcatctaacta---tttcactaactataattaataagggtgttttagtaaatgaaccatatttttccattgaaatcaac 7930153  T
Q  836 actactaataatttacttaataatcgtgtaaaactcaaaagagatacctattatgggacgg 896  Q
    ||||||||| |||| |||||||| |||||||||| |||||| || ||||||| || |||||    
T  7930154 actactaatcattttcttaataaccgtgtaaaacccaaaagggacacctattttgagacgg 7930214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 649 - 876
Target Start/End: Original strand, 14063219 - 14063457
Alignment:
Q  649 gtgtcctctttactatttttctat--ctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttat 746  Q
    |||||||||||||||||||||| |  ||| ||| |||| ||  ||||| ||||  |||||||| ||||||||| ||||||||||||||||||||||||||    
T  14063219 gtgtcctctttactatttttctttgtctctaatgatttctc--ttttacaatatcaatacaacatttattattattttccattaacatacccttatttat 14063316  T
Q  747 tgcatttcaataagctaactactcc-----------tccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaac 835  Q
    ||||||||||| | |||||||||||           |||| |||||||||||||| |||||  |||||||||| | | ||||||||| ||||||||||||    
T  14063317 tgcatttcaatcatctaactactccactaacactactccactaactataactaatgagggtggtttagtaaattaaacatattttaccattaaaatcaac 14063416  T
Q  836 actactaataatttacttaataatcgtgtaaaactcaaaag 876  Q
    | ||||||| |||| ||||||| ||||||||||||||||||    
T  14063417 attactaatcatttccttaatagtcgtgtaaaactcaaaag 14063457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 649 - 876
Target Start/End: Original strand, 14373247 - 14373485
Alignment:
Q  649 gtgtcctctttactatttttctat--ctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttat 746  Q
    |||||||||||||||||||||| |  ||| ||| |||| ||  ||||| ||||  |||||||| ||||||||| ||||||||||||||||||||||||||    
T  14373247 gtgtcctctttactatttttctttgtctctaatgatttctc--ttttacaatatcaatacaacatttattattattttccattaacatacccttatttat 14373344  T
Q  747 tgcatttcaataagctaactactcc-----------tccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaac 835  Q
    ||||||||||| | |||||||||||           |||| |||||||||||||| |||||  |||||||||| | | ||||||||| ||||||||||||    
T  14373345 tgcatttcaatcatctaactactccactaacactactccactaactataactaatgagggtggtttagtaaattaaacatattttaccattaaaatcaac 14373444  T
Q  836 actactaataatttacttaataatcgtgtaaaactcaaaag 876  Q
    | ||||||| |||| ||||||| ||||||||||||||||||    
T  14373445 attactaatcatttccttaatagtcgtgtaaaactcaaaag 14373485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 652 - 868
Target Start/End: Original strand, 34000346 - 34000561
Alignment:
Q  652 tcctctttactatttttct--atctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgc 749  Q
    |||||||| ||||||||||  |||| |||| |||| ||  ||||||||||  |||||||| ||||||||||||||||| ||||||| ||||||||||||     
T  34000346 tcctctttgctatttttctttatcttaaattatttatcatttttataatatcaatacaacatttattattcttttccactaacatatccttatttattgt 34000445  T
Q  750 atttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataattt 849  Q
    |||||||| | ||||| | |   ||   ||||||||||||||||| ||||||||||||  | | ||||||||| |||| |||| | || | |||| ||||    
T  34000446 atttcaatcatctaaccattttccc---aactataactaataaggatattttagtaaaataaacatattttaccattagaatctataccattaatcattt 34000542  T
Q  850 acttaataatcgtgtaaaa 868  Q
     |||||||| | |||||||    
T  34000543 tcttaataaccatgtaaaa 34000561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 672 - 747
Target Start/End: Original strand, 31327341 - 31327415
Alignment:
Q  672 tctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttatt 747  Q
    |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||    
T  31327341 tctcaaattatttgtcc-ttttataatacaaatacaacatttattattcttttccactaacatactcttatttatt 31327415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 691 - 863
Target Start/End: Complemental strand, 28202480 - 28202310
Alignment:
Q  691 tttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaat 790  Q
    |||| ||||| |||||| | ||||||||| ||||||||||  |||| ||||||||||| ||||||   | ||   |||| ||||| |||||| || ||||    
T  28202480 tttagaataccaatacagcatttattatttttttccattattatactcttatttattgaatttcatccaactt--tactactccactaactacaattaat 28202383  T
Q  791 aagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||| | ||||||||||||||||  ||||||| || ||||||||||| | |||| |||| |||||||| ||||    
T  28202382 aaggatgttttagtaaatgacattaattttaccatcaaaatcaacacaattaattattttcttaataaccgtg 28202310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 691 - 863
Target Start/End: Original strand, 42935616 - 42935789
Alignment:
Q  691 tttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagct-aactactcctccattaactataactaa 789  Q
    |||| ||||||||| |||| ||||||||| ||| | ||||  |||| ||||||||||| | ||||   | || |||| |||||||| |||||| || |||    
T  42935616 tttagaatacaaatgcaacatttattattttttccaattataatactcttatttattgaacttcatccaacttaactcctcctccactaactacaattaa 42935715  T
Q  790 taagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||| ||||||||||||| ||  ||||||| || ||||||||||| | |||| |||| |||||||| ||||    
T  42935716 taagggtgttttagtaaatgatattaattttaccatcaaaatcaacacaattaatcattttcttaataaccgtg 42935789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 684 - 771
Target Start/End: Original strand, 7322333 - 7322420
Alignment:
Q  684 tgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcc 771  Q
    |||| |||||||||||  |||||||| ||||||||||||||| | |||||||||| | |||||||||||| ||| | |||||||||||    
T  7322333 tgtctcttttataatattaatacaacatttattattcttttctaataacatacccctgtttattgcattttaattatctaactactcc 7322420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 638 - 757
Target Start/End: Complemental strand, 47499993 - 47499870
Alignment:
Q  638 tctcataataggtgtcctctttactatttttctatctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttcc----attaaca 733  Q
    ||||| |||| ||||| |||||| ||||||| | ||||| || |||| ||  |||||||||||||||||||| ||||||||| ||||||    |||||||    
T  47499993 tctcaaaatatgtgtcttctttattatttttttgtctcatattatttatcaattttataatacaaatacaacatttattatttttttccactaattaaca 47499894  T
Q  734 tacccttatttattgcatttcaat 757  Q
     |||  ||||||||||||||||||    
T  47499893 cacctctatttattgcatttcaat 47499870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 711 - 860
Target Start/End: Complemental strand, 3178355 - 3178208
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatga 810  Q
    ||||||||  ||| ||||||| |||||||||||||||| ||||||   | || |  ||| ||||| |||||| || |||||| ||| |||||||||||||    
T  3178355 tttattatgttttcccattaatatacccttatttattgaatttcatccaactta--actactccactaactacaattaataaaggtgttttagtaaatga 3178258  T
Q  811 catatattttacaattaaaatcaacactactaataatttacttaataatc 860  Q
     ||  ||||||| || ||||||||||| |  ||| |||||||||||||||    
T  3178257 tattaattttaccatcaaaatcaacacaatcaatcatttacttaataatc 3178208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 711 - 849
Target Start/End: Original strand, 762136 - 762271
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatga 810  Q
    |||||| |||||||| |  |||||| |||||||||||  |||||||| | |||||||||||   || |||||| | ||||||| || ||||||||||||     
T  762136 tttatttttcttttctacaaacatatccttatttattatatttcaattatctaactactcc---atgaactatgattaataagtgtgttttagtaaatgt 762232  T
Q  811 catatattttacaattaaaatcaacactactaataattt 849  Q
     | | ||||||  |||||||| |||||||||||| ||||    
T  762233 aacacattttatcattaaaattaacactactaatcattt 762271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 691 - 863
Target Start/End: Original strand, 21390252 - 21390423
Alignment:
Q  691 tttataatacaaatacaacttttattattctttt-ccattaacatacccttatttattgcatttca-ataagctaactactcctccattaactataacta 788  Q
    |||||||||| ||| |||| ||||||||| |||| ||||||  |||||||||||||||| ||||||  |||  ||||||   ||||| |||||| ||  |    
T  21390252 tttataataccaatgcaacgtttattattttttttccattattatacccttatttattgaatttcatctaacttaacta---ctccactaactacaatca 21390348  T
Q  789 ataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||||| | ||||||||||||| ||   |||||| || ||||| ||||| | |||| |||| |||||||||||||    
T  21390349 ataaggatgttttagtaaatgatattagttttaccatcaaaattaacacaattaatcatttccttaataatcgtg 21390423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 874
Target Start/End: Complemental strand, 25531072 - 25530980
Alignment:
Q  782 ataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaa 874  Q
    |||| ||||||| || |||||||||||||   | ||||| | |||||||||||||||| |||| ||||  ||| |||||||||||||||||||    
T  25531072 ataattaataagagtgttttagtaaatgatgcacattttgccattaaaatcaacactattaatcatttttttagtaatcgtgtaaaactcaaa 25530980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 690 - 757
Target Start/End: Complemental strand, 27557140 - 27557074
Alignment:
Q  690 ttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaat 757  Q
    |||||||||||||||| ||  ||||||| | ||||| ||||||||||| |||||||||||||||||||    
T  27557140 ttttataatacaaatataaaatttattacttttttc-attaacataccattatttattgcatttcaat 27557074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 777 - 863
Target Start/End: Original strand, 9786030 - 9786116
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||||| || ||||||| || ||||||||||||| ||  ||||||| || ||||||||||| | |||| |||| |||||||||||||    
T  9786030 taactacaattaataagcgtgttttagtaaatgaaattaattttaccatcaaaatcaacacaattaatcatttccttaataatcgtg 9786116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 644 - 755
Target Start/End: Original strand, 13906607 - 13906720
Alignment:
Q  644 aataggtgtcctctttactatttt--tctatctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacataccctta 741  Q
    ||||| |||||| |||||||||||  | ||| |||||| |||||||  ||||| ||||| |||||||| || ||| |||||||||| || |||||  |||    
T  13906607 aatagatgtcctttttactatttttatttatttcaaattatttgtctattttacaatactaatacaacattcatttttcttttccactaccatactttta 13906706  T
Q  742 tttattgcatttca 755  Q
    |||||| |||||||    
T  13906707 tttattccatttca 13906720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 795 - 873
Target Start/End: Original strand, 25521641 - 25521718
Alignment:
Q  795 gtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaa 873  Q
    |||||||| ||||| | |||||||||||| ||||||| ||||||| ||||||||| || |||||  |||||||||||||    
T  25521641 gtattttaataaataaaatatattttaca-ttaaaataaacactattaataatttcctcaataactgtgtaaaactcaa 25521718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 676 - 757
Target Start/End: Complemental strand, 27570167 - 27570086
Alignment:
Q  676 aaatcatttgtcccttttataatacaaatacaacttttatta-ttcttttccattaacatacccttatttattgcatttcaat 757  Q
    |||| |||||||| ||||||||| |||||| ||| ||||||| || |||| |||||||||||  |||||||||||||||||||    
T  27570167 aaattatttgtcctttttataat-caaatataacatttattacttttttttcattaacatactattatttattgcatttcaat 27570086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 775 - 844
Target Start/End: Original strand, 15464718 - 15464787
Alignment:
Q  775 attaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaat 844  Q
    ||||||||||| ||| ||| ||| |||||||||||| | | ||||||| |||||||||||||||| ||||    
T  15464718 attaactataattaacaagagtactttagtaaatgatacacattttaccattaaaatcaacactattaat 15464787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 704 - 757
Target Start/End: Complemental strand, 21105794 - 21105741
Alignment:
Q  704 tacaacttttattattcttttccattaacatacccttatttattgcatttcaat 757  Q
    |||||| |||||||||||||| ||||||||||  ||||||||||| ||||||||    
T  21105794 tacaacatttattattctttttcattaacataatcttatttattgtatttcaat 21105741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 836
Target Start/End: Original strand, 39452396 - 39452445
Alignment:
Q  787 taataagggtattttagtaaatgacatatattttacaattaaaatcaaca 836  Q
    |||||||||||||||||||||||| ||  ||||||| |||||||||||||    
T  39452396 taataagggtattttagtaaatgatattaattttaccattaaaatcaaca 39452445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 863
Target Start/End: Original strand, 26974062 - 26974157
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatga-catat--attttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || ||||||| ||||||||||||||||  ||||  ||||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  26974062 ctccactaactacaattaataagagtattttagtaaatgatgatattaattttaccattgaaatcaacacaattaatcatttccttaataatcgtg 26974157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 681 - 757
Target Start/End: Complemental strand, 35016450 - 35016374
Alignment:
Q  681 atttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaat 757  Q
    |||||||||||||  ||||  |||||||| |||||||   ||||||| |||||||| |||||||||| |||||||||    
T  35016450 atttgtcccttttgcaatatcaatacaacatttattacgtttttccactaacatactcttatttattacatttcaat 35016374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 691 - 755
Target Start/End: Original strand, 40076276 - 40076340
Alignment:
Q  691 tttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttca 755  Q
    |||||||||| ||| || | ||||||||| |||||||||| || |||||||||||||| ||||||    
T  40076276 tttataataccaatgcagcatttattatttttttccattatcacacccttatttattgaatttca 40076340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 874
Target Start/End: Complemental strand, 17783184 - 17783081
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaact 870  Q
    ||||| ||||||||| |||||| | | ||||||||||  ||| ||||||||| ||||| ||||| |||| |||| || |  ||||||  |||||||||||    
T  17783184 ctccactaactataattaataaagatgttttagtaaacaacacatattttactattaagatcaaaactattaatcatctctttaatacccgtgtaaaact 17783085  T
Q  871 caaa 874  Q
    ||||    
T  17783084 caaa 17783081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 779 - 874
Target Start/End: Original strand, 30107160 - 30107255
Alignment:
Q  779 actataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaa 874  Q
    ||||||| | |||||||||||| ||||||| | ||  ||||||| ||||||||||||   |||||| |||| ||||| |||| ||||||| |||||    
T  30107160 actataattcataagggtatttaagtaaataatattaattttaccattaaaatcaactaaactaattattttcttaagaatcatgtaaaattcaaa 30107255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 822
Target Start/End: Original strand, 47254956 - 47255003
Alignment:
Q  775 attaactataactaataagggtattttagtaaatgacatatattttac 822  Q
    ||||||||||| ||||||| || ||||||||||||| |||||||||||    
T  47254956 attaactataattaataagagtgttttagtaaatgaaatatattttac 47255003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 772 - 810
Target Start/End: Original strand, 25571456 - 25571494
Alignment:
Q  772 tccattaactataactaataagggtattttagtaaatga 810  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  25571456 tccactaactacaactaataagggtattttagtaaatga 25571494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 860
Target Start/End: Complemental strand, 21760077 - 21759988
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatc 860  Q
    |||||||||||| || || ||||||| ||||| ||||||| |   ||||||| || ||||||||||| | |||| |||| ||||||||||    
T  21760077 ctccattaactacaattagtaagggtgttttattaaatgatactaattttaccatcaaaatcaacacaattaatcattttcttaataatc 21759988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 681 - 872
Target Start/End: Complemental strand, 23915609 - 23915421
Alignment:
Q  681 atttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaac 780  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||| | ||||| || ||||||||||| |||||||| | |||||||   ||||| ||||    
T  23915609 atttgtcccttttacaataccaatacaacatttattattcttttctactaacacactcttatttattgtatttcaatcacctaacta---ctccactaac 23915513  T
Q  781 tataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactca 872  Q
    ||||| |||||| | | ||||||||||| | | ||||||||| ||||||||||||||||||||| |||| ||||||||  | ||||||||||    
T  23915512 tataattaataatgatgttttagtaaattaaacatattttaccattaaaatcaacactactaatcatttccttaataactgcgtaaaactca 23915421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 638 - 887
Target Start/End: Original strand, 17121140 - 17121387
Alignment:
Q  638 tctcataataggtgtcctctttactatttttctatctcaaatc--atttgtcccttttataatacaaatacaacttttattattcttttccattaacata 735  Q
    ||||| ||| |||||| | |||||||||||||| | ||| ||   |||||||||||||| ||||| ||| |||| ||||||||| |||| || |||||||    
T  17121140 tctcaaaattggtgtcttttttactatttttctttgtcacatattatttgtcccttttacaataccaatgcaacatttattattatttttcactaacata 17121239  T
Q  736 cccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaac 835  Q
    || ||||||||||||||||||| | ||||||    || || ||||||||| ||| |||||| ||| | ||||  | | ||||||||  ||||||||||||    
T  17121240 ccattatttattgcatttcaatcatctaact----ctacactaactataattaacaagggtgtttcaataaactaaacatattttatcattaaaatcaac 17121335  T
Q  836 actactaataatttacttaataatcgtgtaaaactcaaaagagatacctatt 887  Q
    | ||| ||| |||| ||||||||| ||||||||||||||| ||| |||||||    
T  17121336 aataccaatcattttcttaataattgtgtaaaactcaaaatagacacctatt 17121387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 683 - 875
Target Start/End: Complemental strand, 39158051 - 39157861
Alignment:
Q  683 ttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaacta 782  Q
    |||||| ||||||||||  |||||||| |||||||||||||||||| || |||   ||||||||| ||||||||| |  |||||||||  |   || |||    
T  39158051 ttgtccattttataatattaatacaacatttattattcttttccatcaatatatttttatttatttcatttcaatcatttaactactctac---tagcta 39157955  T
Q  783 taactaataagggtattttagtaaatgacatatattttacaattaaaatcaa-cactactaataatttacttaataatcgtgtaaaactcaaaa 875  Q
    ||| ||||||| |||||||||||||||| | | ||||||| || ||||| || ||| |||||| |||| |||||||||||||||||||||||||    
T  39157954 taattaataagtgtattttagtaaatgaaacaaattttaccatcaaaattaaacacaactaatcattttcttaataatcgtgtaaaactcaaaa 39157861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 672 - 874
Target Start/End: Original strand, 50442924 - 50443125
Alignment:
Q  672 tctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcc 771  Q
    |||||||| |||||||||||| ||||||  |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | || |  ||| |    
T  50442924 tctcaaattatttgtccctttaataatatcaatacaacatttattattcttttccactaacatacccttatttattgcatttcaatcatct-ataactac 50443022  T
Q  772 tccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaata------atttacttaataatcgtgta 865  Q
    | || ||||||||      | |||| ||||||||||| | | | ||||||| |||||||||||||||| |||||      |||| ||||||||||||||     
T  50443023 ttcactaactata------atgggtgttttagtaaatcatacagattttaccattaaaatcaacactattaatattaatcatttccttaataatcgtgtg 50443116  T
Q  866 aaactcaaa 874  Q
    |||||||||    
T  50443117 aaactcaaa 50443125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 690 - 771
Target Start/End: Original strand, 13138640 - 13138721
Alignment:
Q  690 ttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcc 771  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||    
T  13138640 ttttataataccaatataacatttattattcttttccattaacatacatttatttattgcatttcaatcatctaactactcc 13138721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 646 - 759
Target Start/End: Complemental strand, 3068150 - 3068035
Alignment:
Q  646 taggtgtcctctttacta--tttttctatctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatt 743  Q
    |||||||||| |||||||  ||||| | |||| ||| ||||||||||| |||||||| |||||| | |||||||||||||| || | | |||||||||||    
T  3068150 taggtgtcctttttactaattttttttttctctaattatttgtcccttatataatactaatacatcatttattattctttttcactgatatacccttatt 3068051  T
Q  744 tattgcatttcaataa 759  Q
    ||||||||||||||||    
T  3068050 tattgcatttcaataa 3068035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 796 - 896
Target Start/End: Complemental strand, 11024957 - 11024857
Alignment:
Q  796 tattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaagagatacctattatgggacg 895  Q
    ||||||||||||||| | ||||| ||| |||||||||||||||| |||| |||| ||||||   ||||||||||||||| |||| ||||| |||| ||||    
T  11024957 tattttagtaaatgaaacatattataccattaaaatcaacactattaatcattttcttaatttccgtgtaaaactcaaatgagacacctaatatgagacg 11024858  T
Q  896 g 896  Q
    |    
T  11024857 g 11024857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 777 - 865
Target Start/End: Complemental strand, 42517724 - 42517636
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgta 865  Q
    ||||||||| ||||||||||||||||||||||||  |  ||||||| ||| |||||||||| | |||| |||| |||||||||||||||    
T  42517724 taactataattaataagggtattttagtaaatgatcttaattttaccattgaaatcaacacaattaatcattttcttaataatcgtgta 42517636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 638 - 757
Target Start/End: Original strand, 40445215 - 40445334
Alignment:
Q  638 tctcataataggtgtcctctttactatttttctatctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacc 737  Q
    ||||||| |||||||  ||||| |||||||| | ||||||| |||||| |  ||||||| |||||||||||| ||||||||| |||| |  || |||||     
T  40445215 tctcatattaggtgttatcttttctatttttttttctcaaaccatttgactattttatattacaaatacaacatttattattttttttctctagcataca 40445314  T
Q  738 cttatttattgcatttcaat 757  Q
     |||||||||||||||||||    
T  40445315 tttatttattgcatttcaat 40445334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 706 - 868
Target Start/End: Complemental strand, 49428497 - 49428337
Alignment:
Q  706 caacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagta 805  Q
    |||| ||||||| | ||||||||||  |||||||||||||||| ||||||   | || | |  | ||||| |||||| || |||||||||||||||||||    
T  49428497 caacatttattacttttttccattattatacccttatttattgaatttcatccaacttaat--tactccactaactacaattaataagggtattttagta 49428400  T
Q  806 aatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaa 868  Q
    ||| | ||  ||||||| ||| |||||||||| | |||| |||| ||||||||||||| ||||    
T  49428399 aattatattaattttaccattgaaatcaacacaaataatcatttccttaataatcgtgcaaaa 49428337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 674 - 771
Target Start/End: Original strand, 23313372 - 23313472
Alignment:
Q  674 tcaaatcatttgtcccttttataatacaaatacaactt---ttattattcttttccattaacatacccttatttattgcatttcaataagctaactactc 770  Q
    |||||| |||||||||||||||||||  || ||||| |   |||||||| |||||| |||||||| | |||||||||||||||||||   ||||||||||    
T  23313372 tcaaattatttgtcccttttataataacaacacaacatatattattattattttcctttaacatatcattatttattgcatttcaatctcctaactactc 23313471  T
Q  771 c 771  Q
    |    
T  23313472 c 23313472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 777 - 863
Target Start/End: Complemental strand, 38405188 - 38405102
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||||| || |||||||||||||||||||||||| ||  ||||||| ||| |||||||||  | |||| |||| |||||||||||||    
T  38405188 taactacaattaataagggtattttagtaaatgatattaattttaccatttaaatcaacagaattaatcatttccttaataatcgtg 38405102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 787 - 868
Target Start/End: Original strand, 3929242 - 3929323
Alignment:
Q  787 taataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaa 868  Q
    |||||||| | |||||||||||   ||| ||||||| |||||||| |||||||||||| ||||  |||||||||||||||||    
T  3929242 taataaggttgttttagtaaatagaatacattttaccattaaaataaacactactaatcatttctttaataatcgtgtaaaa 3929323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 835
Target Start/End: Complemental strand, 5841519 - 5841455
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaac 835  Q
    ||||| |||||| || |||||||||||||||||||||||| ||  ||||||| ||||||||||||    
T  5841519 ctccactaactacaattaataagggtattttagtaaatgatattaattttaccattaaaatcaac 5841455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 863
Target Start/End: Complemental strand, 11907691 - 11907599
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || |||||||||| ||||||||||||| |   ||||||| || ||||||||||| | |||| |||| |||||||||||||    
T  11907691 ctccaataactacaattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcatttccttaataatcgtg 11907599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 831
Target Start/End: Complemental strand, 21761175 - 21761029
Alignment:
Q  681 atttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaac 780  Q
    |||||||| ||||| ||||| || ||||  |||||||||||||||||||||||||   || |||||||||||| ||| | |||||||   |  |||||||    
T  21761175 atttgtccattttacaatactaacacaatatttattattcttttccattaacata-tattttttattgcattttaatcatctaacta---catcattaac 21761080  T
Q  781 tataactaataagggtattttagtaaatgacatatattttacaattaaaat 831  Q
    ||||| | ||||  |||||||| ||||||| ||  ||||||| ||||||||    
T  21761079 tataatttataaaagtattttaataaatgaaattcattttaccattaaaat 21761029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 863
Target Start/End: Complemental strand, 28500967 - 28500891
Alignment:
Q  787 taataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||||||||||||||||||||||| ||  ||||||| ||| |||||||||| |  ||| |||| |||||||||||||    
T  28500967 taataagggtattttagtaaatgatattaattttaccattgaaatcaacacaatcaatcatttccttaataatcgtg 28500891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 711 - 858
Target Start/End: Complemental strand, 47773169 - 47773024
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatga 810  Q
    ||||||||| ||||||||||  |||||||||||||||| | ||||   | || |  ||| ||||| |||||| || |||||||||| |||||||||||||    
T  47773169 tttattatttttttccattataatacccttatttattgaacttcatccaactta--actactccactaactacaattaataagggtgttttagtaaatga 47773072  T
Q  811 catatattttacaattaaaatcaacactactaataatttacttaataa 858  Q
     |   ||||||| || ||||||||||| | |||| |||| ||||||||    
T  47773071 tactaattttaccatcaaaatcaacacaattaattatttccttaataa 47773024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 782 - 877
Target Start/End: Original strand, 9028637 - 9028731
Alignment:
Q  782 ataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaaga 877  Q
    |||| |||||||| | |||| |||||||| | | |||||||||| ||||| || | ||||||| |||| |||||||| ||||||||||||||||||    
T  9028637 ataattaataaggattttttggtaaatgaaacacattttacaataaaaattaa-attactaatcattttcttaataaccgtgtaaaactcaaaaga 9028731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 722 - 863
Target Start/End: Complemental strand, 33790870 - 33790731
Alignment:
Q  722 tttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatatttta 821  Q
    |||||||||  |||||||||||||||| ||||||   | || |  ||| ||||| |||||| || |||||||||| |||||| |||||| |   ||||||    
T  33790870 tttccattattatacccttatttattgaatttcatccaactta--actactccactaactacaattaataagggtgttttagcaaatgaaactaatttta 33790773  T
Q  822 caattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    | || ||||||||||| | |||| |||| |||||||||||||    
T  33790772 ccatcaaaatcaacacaattaatcattttcttaataatcgtg 33790731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 711 - 753
Target Start/End: Complemental strand, 40546379 - 40546337
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcattt 753  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  40546379 tttattattcttttccactaacatacctttatttattgcattt 40546337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 691 - 755
Target Start/End: Complemental strand, 42617073 - 42617009
Alignment:
Q  691 tttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttca 755  Q
    |||| ||||||||| |||| ||||||||| ||||||||||  |||| ||||||||||| ||||||    
T  42617073 tttagaatacaaatgcaacatttattattattttccattattatacacttatttattgaatttca 42617009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 863
Target Start/End: Complemental strand, 52859891 - 52859799
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || |||||||| | ||||||||||||| |   ||||||| || ||||||||||| | |||| |||| |||||||||||||    
T  52859891 ctccactaactacaattaataaggatgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcatttccttaataatcgtg 52859799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 755
Target Start/End: Original strand, 3929166 - 3929237
Alignment:
Q  684 tgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttca 755  Q
    |||| |||||| || || |||||||| |||||||||||||| || || ||||| ||| ||||||||||||||    
T  3929166 tgtctcttttacaaaactaatacaacatttattattctttttcactagcatactcttgtttattgcatttca 3929237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 870
Target Start/End: Complemental strand, 10215252 - 10215157
Alignment:
Q  775 attaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaact 870  Q
    ||||||||||| ||||||| |||||||| | ||||| | ||||||||| |||||||| || | || |||| ||||  |||||||  ||||||||||    
T  10215252 attaactataattaataagagtattttaattaatgaaacatattttaccattaaaattaaaaatattaatcatttttttaataactgtgtaaaact 10215157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 858
Target Start/End: Original strand, 17114469 - 17114556
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataa 858  Q
    ||||| |||||| || |||||||||| ||||||||||||| |   ||||||| || ||||||||||| | |||| |||| ||||||||    
T  17114469 ctccactaactacaattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcatttccttaataa 17114556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 726 - 757
Target Start/End: Complemental strand, 40383277 - 40383246
Alignment:
Q  726 cattaacatacccttatttattgcatttcaat 757  Q
    ||||||||||||||||||||||||||||||||    
T  40383277 cattaacatacccttatttattgcatttcaat 40383246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 776 - 863
Target Start/End: Complemental strand, 46396970 - 46396883
Alignment:
Q  776 ttaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||| || ||||||| || ||||||||||||  ||  ||||||| ||| |||||||||| | |||| ||||||||||| ||||||    
T  46396970 ttaactacaattaataagagtgttttagtaaatgctattaattttaccattgaaatcaacacaattaatcatttacttaatgatcgtg 46396883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 674 - 747
Target Start/End: Complemental strand, 34321886 - 34321812
Alignment:
Q  674 tcaaatcatttgtcccttttataatacaaatacaacttttatta-ttcttttccattaacatacccttatttatt 747  Q
    |||||| |||| ||||||||||||||  |||||||| || |||| || ||||||| |||| ||||||||||||||    
T  34321886 tcaaattatttatcccttttataatatcaatacaacattcattactttttttccaataacgtacccttatttatt 34321812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 359 - 397
Target Start/End: Original strand, 54779182 - 54779220
Alignment:
Q  359 tttgaatgtaatcacatgtgtcagtgtcatgttggtgtc 397  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  54779182 tttgaacgtaatcacatgtgtcagtgtcatgttagtgtc 54779220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 865
Target Start/End: Complemental strand, 7061755 - 7061662
Alignment:
Q  772 tccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgta 865  Q
    |||| |||||| || |||||| | |||| |||||||||| |   ||||||| ||| |||||||||| | |||| |||| |||||||||||||||    
T  7061755 tccactaactacaattaataaagatattatagtaaatgatactaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgta 7061662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 683 - 810
Target Start/End: Complemental strand, 54226007 - 54225883
Alignment:
Q  683 ttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaacta 782  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |   ||||| ||||||    
T  54226007 ttgtcccttttacaataccaatacaacatttattattcttttccattaacatacccttatttattgcatttcaatcatctaacca---ctccactaacta 54225911  T
Q  783 taactaataagggtattttagtaaatga 810  Q
    ||| |||||||| | |||||||||||||    
T  54225910 taattaataaggctgttttagtaaatga 54225883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 771 - 877
Target Start/End: Original strand, 47825088 - 47825194
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaact 870  Q
    ||||||||| ||||| | |||||||||||||||||||||| | ||||||||| || ||||| |||||||| ||| ||||  ||||||| | |||||||||    
T  47825088 ctccattaattataattcataagggtattttagtaaatgaaacatattttaccatcaaaattaacactaccaatcatttttttaataaccttgtaaaact 47825187  T
Q  871 caaaaga 877  Q
    |||||||    
T  47825188 caaaaga 47825194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 691 - 863
Target Start/End: Complemental strand, 37695831 - 37695660
Alignment:
Q  691 tttataatacaaatacaacttttattattctttt-ccattaacatacccttatttattgcatttcaa-taagctaactactcctccattaactataacta 788  Q
    |||| ||||| ||| |||| ||||||||| |||| ||||||  |||||||||||||||| ||||||  |||  |||||||||| |   |||||| || ||    
T  37695831 tttagaataccaatgcaacatttattattttttttccattattatacccttatttattgaatttcatctaacttaactactccac---taactacaatta 37695735  T
Q  789 ataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||||||| ||||||||||||| ||  ||||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  37695734 ataagggtgttttagtaaatgatattaattttaccattgaaatcaacacaattaatcatttccttaataatcgtg 37695660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 787 - 877
Target Start/End: Complemental strand, 25090124 - 25090034
Alignment:
Q  787 taataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaaga 877  Q
    ||||||| || |||||| || ||| | |||||||||||||||||| |||||||||||| |||| |||||||||||||||||  ||||||||    
T  25090124 taataagagtgttttagaaattgaaacatattttacaattaaaattaacactactaatcattttcttaataatcgtgtaaatttcaaaaga 25090034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 771 - 874
Target Start/End: Original strand, 47825630 - 47825733
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaact 870  Q
    ||||||||| ||||| | |||||||||||||||||||||| | ||||||||| || ||||| |||||||| ||| ||||  | ||||| | |||||||||    
T  47825630 ctccattaattataattcataagggtattttagtaaatgaaacatattttaccatcaaaattaacactaccaatcattttttcaataaccttgtaaaact 47825729  T
Q  871 caaa 874  Q
    ||||    
T  47825730 caaa 47825733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 771 - 863
Target Start/End: Complemental strand, 24569186 - 24569094
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || |||||||||||||||||||||| | ||  ||||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  24569186 ctccactaactacaattaataagggtattttagtaaataatattaattttaccattgaaatcaacacaattaatcattttcttaataatcgtg 24569094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 777 - 873
Target Start/End: Original strand, 39931664 - 39931760
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaa 873  Q
    ||||||||| ||||||| || ||||| ||||||| | ||||||| | |||||||||||||||| |||||||||  ||||||| ||| ||||| ||||    
T  39931664 taactataattaataagtgtgttttaataaatgatacatattttgccattaaaatcaacactattaataatttctttaataaccgtctaaaattcaa 39931760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 690 - 753
Target Start/End: Complemental strand, 30251424 - 30251361
Alignment:
Q  690 ttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcattt 753  Q
    ||||||||||| ||||||||  |||||||| ||||||| ||||||||||||||||||| |||||    
T  30251424 ttttataatactaatacaacacttattattgttttccaataacatacccttatttattacattt 30251361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 702 - 879
Target Start/End: Complemental strand, 49215522 - 49215344
Alignment:
Q  702 aatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctc-cattaactataactaataagggtattt 800  Q
    |||||||| | |||||||| ||||| |||||| || ||||||||||| |||||||| | ||||||| ||  |  ||||| ||||| |||||||  |||||    
T  49215522 aatacaacatctattattcctttcctttaacacactcttatttattgtatttcaatcatctaactattctactaattaattataattaataagcatattt 49215423  T
Q  801 tagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaagaga 879  Q
    |||||||||| | | |||| |  ||| |||| |||  || |||| ||||  ||||| ||||||||||| ||||||||||    
T  49215422 tagtaaatgaaacacatttgattattgaaatgaacgttattaatcatttttttaatgatcgtgtaaaaatcaaaagaga 49215344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 771 - 857
Target Start/End: Complemental strand, 51838045 - 51837959
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaata 857  Q
    ||||| || ||| ||||||||||||||||||||||||||| ||  ||||||  ||| |||||||||| | |||| ||||||||||||    
T  51838045 ctccactagctacaactaataagggtattttagtaaatgatattaattttatcattgaaatcaacacaattaatcatttacttaata 51837959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 683 - 863
Target Start/End: Original strand, 19822955 - 19823132
Alignment:
Q  683 ttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaacta 782  Q
    ||||| |||||| ||||| ||| || | ||||||||| ||||| ||||| |||||||||||||||| ||||||   | || |  |||  |||| ||||||    
T  19822955 ttgtcacttttagaataccaatgcagcatttattatttttttc-attaatatacccttatttattgaatttcatccaactta--actattccactaacta 19823051  T
Q  783 taactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
     || |||||||||| ||||||||||||| |   ||| ||| || ||||||||||| | |||| |||| |||||||||||||    
T  19823052 caattaataagggtgttttagtaaatgatactaattctaccatcaaaatcaacacaattaatcatttccttaataatcgtg 19823132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 715 - 860
Target Start/End: Complemental strand, 37773104 - 37772961
Alignment:
Q  715 ttattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacata 814  Q
    ||||| ||||||||||  ||||||||||||| || |||||| | | || |  |||  |||| | ||||||| |||||||||||||||||||||||| ||     
T  37773104 ttatttttttccattattatacccttatttaatgaatttcattcaactta--actattccactgactataattaataagggtattttagtaaatgatatt 37773007  T
Q  815 tattttacaattaaaatcaacactactaataatttacttaataatc 860  Q
     ||||||| |||  |||||| || | |||| |||| ||||||||||    
T  37773006 aattttaccattgtaatcaatacaattaatcatttccttaataatc 37772961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 699
Target Start/End: Complemental strand, 29778773 - 29778712
Alignment:
Q  638 tctcataataggtgtcctctttactatttttctatctcaaatcatttgtcccttttataata 699  Q
    |||||||||||||||||||||| |||  ||| ||| |||||| |||| ||||||||||||||    
T  29778773 tctcataataggtgtcctcttttctaaatttttatttcaaattatttttcccttttataata 29778712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 711 - 863
Target Start/End: Original strand, 36476555 - 36476705
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatga 810  Q
    ||||||| | ||||| ||||  |||||||||||||||| ||||||  || || |  ||| ||| | |||||| || ||||||||||||||||||||||||    
T  36476555 tttattacttttttctattattatacccttatttattgaatttcatcaaactta--actactctactaactacaattaataagggtattttagtaaatga 36476652  T
Q  811 catatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
     ||  ||||||| |||  ||||||||| |  ||| |||| |||||||| ||||    
T  36476653 tattaattttaccattgcaatcaacacaatcaattattttcttaataaccgtg 36476705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 753
Target Start/End: Original strand, 53863763 - 53863824
Alignment:
Q  692 ttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcattt 753  Q
    ||||||||| |||| ||| ||||||||||||||||| || |||||||||||| ||| |||||    
T  53863763 ttataatactaataaaacatttattattcttttccactatcatacccttattaatttcattt 53863824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 863
Target Start/End: Complemental strand, 30190746 - 30190654
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || |||||||||||||||||||||||| |   ||||||| ||| |||||||||| | |||| |||| ||| |||| ||||    
T  30190746 ctccactaactacaattaataagggtattttagtaaatgatactaattttaccattgaaatcaacacaattaatcatttccttcataaccgtg 30190654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 863
Target Start/End: Original strand, 37311979 - 37312071
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || |||||||||| ||||||||||||  |   ||||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  37311979 ctccactaactacaattaataagggttttttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttccttaataatcgtg 37312071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 863
Target Start/End: Complemental strand, 43253949 - 43253857
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || |||||||||| ||||||||||||  |   ||||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  43253949 ctccactaactacaattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttccttaataatcgtg 43253857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 775 - 831
Target Start/End: Original strand, 48893773 - 48893829
Alignment:
Q  775 attaactataactaataagggtattttagtaaatgacatatattttacaattaaaat 831  Q
    ||||||||||| ||||||| || |||||| |||||| ||||||||||| ||||||||    
T  48893773 attaactataattaataagagtgttttagcaaatgatatatattttaccattaaaat 48893829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 676 - 768
Target Start/End: Complemental strand, 52028496 - 52028404
Alignment:
Q  676 aaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactac 768  Q
    |||| |||||||| |||||| |||  || ||||| ||||||||| |||| || |||||||| ||| ||| |||||||||||| | ||||||||    
T  52028496 aaattatttgtcctttttattatatcaaaacaacgtttattattatttttcactaacatactctttttttttgcatttcaatcacctaactac 52028404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 777 - 863
Target Start/End: Complemental strand, 8679134 - 8679048
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||| |||||||| | ||||||||||||  |   ||||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  8679134 taactataattaataaggatcttttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttccttaataatcgtg 8679048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 777 - 863
Target Start/End: Original strand, 53560252 - 53560338
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||  |||||||||| ||||||||||||| | | ||||||| || ||||||||||  | |||| |||| |||||| ||||||    
T  53560252 taactatatttaataagggtgttttagtaaatgatacaaattttaccatcaaaatcaacataattaatcatttccttaatcatcgtg 53560338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 771 - 837
Target Start/End: Complemental strand, 54477545 - 54477479
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacac 837  Q
    |||||||||||| || ||||||   ||||||||||||||| ||  ||||||| ||||||||||||||    
T  54477545 ctccattaactacaattaataaaaatattttagtaaatgatattaattttaccattaaaatcaacac 54477479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 777 - 858
Target Start/End: Original strand, 29677005 - 29677085
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataa 858  Q
    ||||||| | ||||||| || ||||||||||| | | ||||||||| ||||||||||||| | ||||||||||  |||||||    
T  29677005 taactatgattaataagagtgttttagtaaataaaacatattttacgattaaaatcaaca-ttctaataatttctttaataa 29677085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 836
Target Start/End: Original strand, 30711102 - 30711167
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaaca 836  Q
    |||||||||||| || |||||| ||| ||||||||||||| ||  ||||||  |||||||||||||    
T  30711102 ctccattaactacaattaataatggtgttttagtaaatgatattaattttatcattaaaatcaaca 30711167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 753
Target Start/End: Complemental strand, 47085811 - 47085730
Alignment:
Q  672 tctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcattt 753  Q
    ||||| || |||||| ||||| ||||||  ||||| || | ||||||| ||||||| ||||||||  |||||||||||||||    
T  47085811 tctcatattatttgttcctttcataatatcaatacgacatgtattatttttttccactaacatacttttatttattgcattt 47085730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 3e-29; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 638 - 831
Target Start/End: Original strand, 30996250 - 30996442
Alignment:
Q  638 tctcataataggtgtcctctttactatttttctatctc--aaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacata 735  Q
    ||||| |||||  |||||||||||||||||||| | ||  |||| ||||||| |||||| ||||  |||||||| ||||||||||||| | | |||||||    
T  30996250 tctcacaatagacgtcctctttactatttttctttgtcttaaattatttgtctcttttaaaatatcaatacaacatttattattctttccgactaacata 30996349  T
Q  736 cccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaat 831  Q
    | |||||||||||||||||| | | |||||||   ||||| ||||||||| ||||||| || |||| |||||| | ||||||||||| ||||||||    
T  30996350 ctcttatttattgcatttcatttatctaacta---ctccagtaactataattaataagagtgtttttgtaaattaaatatattttaccattaaaat 30996442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 654 - 757
Target Start/End: Original strand, 23492786 - 23492888
Alignment:
Q  654 ctctttactatttttctatctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcattt 753  Q
    |||||| ||| |||| | |||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  23492786 ctcttttctaattttttgtctcaaattatttgtcc-ttttacaatacaaatacaacatttattattcttttccactaacatactcttatttattgcattt 23492884  T
Q  754 caat 757  Q
    ||||    
T  23492885 caat 23492888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 711 - 876
Target Start/End: Complemental strand, 42363878 - 42363716
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatga 810  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||| | |||||||||     | ||||| ||| |||||||||| || |||||||| |    
T  42363878 tttattattccttttcactaacatacccttatttattgcatttcaattatctaactactgt---aataactttaattaataagggtgttatagtaaatta 42363782  T
Q  811 catatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaag 876  Q
     | | ||||||| ||||||||||| ||||||||| |||| |||||| |  ||||||||||||||||    
T  42363781 aacacattttacgattaaaatcaatactactaatcatttccttaattactgtgtaaaactcaaaag 42363716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 778 - 885
Target Start/End: Original strand, 38763584 - 38763691
Alignment:
Q  778 aactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaaga 877  Q
    |||||||| ||||| | |||||||||||||||| | | ||||||| ||||||||||||||||||||  |||| |||||||| |||||||||||||||||     
T  38763584 aactataattaatatgagtattttagtaaatgaaacacattttaccattaaaatcaacactactaaccatttccttaataaccgtgtaaaactcaaaagg 38763683  T
Q  878 gataccta 885  Q
    || |||||    
T  38763684 gacaccta 38763691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 721 - 885
Target Start/End: Complemental strand, 33730047 - 33729887
Alignment:
Q  721 ttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatatttt 820  Q
    ||||||| |||||||||| |||||||||||||| ||| | |||| ||    |||| ||||||||| |||||||| ||||||| ||||| | | |||||||    
T  33730047 ttttccactaacatacccctatttattgcattttaatcatctaagta---ttccagtaactataattaataaggatattttaataaat-aaacatatttt 33729952  T
Q  821 acaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaagagataccta 885  Q
    |  ||| |||||||||||| |||| |||| |||||||| ||||||||| |||||| ||| |||||    
T  33729951 atgattgaaatcaacactaataatcattttcttaataaccgtgtaaaattcaaaatagagaccta 33729887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 691 - 863
Target Start/End: Original strand, 43410377 - 43410547
Alignment:
Q  691 tttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaat 790  Q
    |||| ||||| ||| |||| ||||||||| ||||||||||  |||| || |||||||| |||||| | | || |  ||| |||||||||||| || ||||    
T  43410377 tttagaatactaatgcaacatttattatttttttccattattatactctcatttattgaatttcattcaactta--actactccattaactacaattaat 43410474  T
Q  791 aagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||| ||||||||||||||| ||  ||||||  ||| | |||||||| | ||||||||| |||||||||||||    
T  43410475 aaggatattttagtaaatgatattaattttatcattgatatcaacacaattaataatttccttaataatcgtg 43410547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 711 - 863
Target Start/End: Original strand, 39691461 - 39691611
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatga 810  Q
    ||||||||| ||||||||||  |||||||||||||||| |||||| | | ||   |||| ||||| |||||  || ||||||| ||||||||||||||||    
T  39691461 tttattattattttccattattatacccttatttattgaatttcattcaactt--tactactccactaactgcaattaataagagtattttagtaaatga 39691558  T
Q  811 catatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
     ||  ||||||  ||| |||||||||| | |||| |||| |||||||||||||    
T  39691559 tattaattttatcattgaaatcaacacaattaatcattttcttaataatcgtg 39691611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 672 - 756
Target Start/End: Original strand, 15873577 - 15873661
Alignment:
Q  672 tctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaa 756  Q
    |||||||| |||||||||||||||||||  |||||||| ||||||| ||||||||| ||||||| || ||||| ||| |||||||    
T  15873577 tctcaaattatttgtcccttttataatatcaatacaacatttattactcttttccactaacatatccatattttttgtatttcaa 15873661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 858
Target Start/End: Original strand, 31976349 - 31976464
Alignment:
Q  740 tatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacacta 839  Q
    |||||||||||||| ||| |  |||||||||| |   ||||||||| || |||| || ||||||||||||| | ||||||||| ||| ||||||||||||    
T  31976349 tatttattgcattttaatcatttaactactccac---taactataattattaagagtgttttagtaaatgaaacatattttactattgaaatcaacacta 31976445  T
Q  840 ctaataatttacttaataa 858  Q
    ||||| |||| ||||||||    
T  31976446 ctaatcatttccttaataa 31976464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 664 - 863
Target Start/End: Original strand, 45235504 - 45235702
Alignment:
Q  664 tttttctatctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttc--cattaacatacccttatttattgcatttcaataagc 761  Q
    |||||||||||||||  | ||||| |||| ||||||| ||| |||| ||||||||| ||||   |||||  ||| |||||||||||| ||||||  || |    
T  45235504 tttttctatctcaaaataattgtcacttt-ataataccaatgcaacatttattattatttttttcattactatatccttatttattgaatttcatcaaac 45235602  T
Q  762 taactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcg 861  Q
    | |  |||  | ||||||||| || |||||||||| ||||||||||||| ||  ||||||| ||| |||||||||| |  ||| |||| |||||||||||    
T  45235603 tta--actatttcattaactacaattaataagggtgttttagtaaatgatattaattttaccattgaaatcaacacaatcaatcatttccttaataatcg 45235700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 780 - 874
Target Start/End: Complemental strand, 34438076 - 34437982
Alignment:
Q  780 ctataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaa 874  Q
    |||||| |||||||  ||||||||||||||| | |||||||   ||||||||||||| || |||| ||||  ||||||| |||||||||||||||    
T  34438076 ctataattaataagaatattttagtaaatgatacatattttgtcattaaaatcaacattattaatcatttttttaataaccgtgtaaaactcaaa 34437982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 711 - 837
Target Start/End: Original strand, 37322400 - 37322523
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttcaa-taagctaactactcctccattaactataactaataagggtattttagtaaatg 809  Q
    ||||||||| ||||||||||  |||||||||||||||| ||||||  |||  |||||||||| |   |||||| || |||||||||||||||| ||||||    
T  37322400 tttattatt-ttttccattattatacccttatttattgaatttcatctaacttaactactccac---taactacaattaataagggtattttaataaatg 37322495  T
Q  810 acatatattttacaattaaaatcaacac 837  Q
    | ||  ||||||| ||| ||||||||||    
T  37322496 atattaattttaccattgaaatcaacac 37322523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 781 - 837
Target Start/End: Original strand, 11367118 - 11367174
Alignment:
Q  781 tataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacac 837  Q
    ||||| |||||| ||||||| ||||||||||||  ||||||||||||||||||||||    
T  11367118 tataattaataaaggtatttaagtaaatgacattaattttacaattaaaatcaacac 11367174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 863
Target Start/End: Original strand, 16805910 - 16806002
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || |||||||| ||||||||||||||| |   ||||||| |||||||||||||| | |||| ||||  ||||||||||||    
T  16805910 ctccactaactacaattaataaggatattttagtaaatgatactaattttactattaaaatcaacacaattaatcatttctttaataatcgtg 16806002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 863
Target Start/End: Original strand, 16845191 - 16845283
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || |||||||| ||||||||||||||| |   ||||||| |||||||||||||| | |||| ||||  ||||||||||||    
T  16845191 ctccactaactacaattaataaggatattttagtaaatgatactaattttactattaaaatcaacacaattaatcatttctttaataatcgtg 16845283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 814 - 874
Target Start/End: Complemental strand, 30832158 - 30832098
Alignment:
Q  814 atattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaa 874  Q
    ||||||| | |||||||||||||||| |||| |||| ||| ||||||||||||||||||||    
T  30832158 atattttgccattaaaatcaacactattaattattttctttataatcgtgtaaaactcaaa 30832098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 706 - 858
Target Start/End: Complemental strand, 14523519 - 14523369
Alignment:
Q  706 caacttttattattcttttccattaacatacccttatttattgcatttcaa-taagctaactactcctccattaactataactaataagggtattttagt 804  Q
    |||| ||||||||| ||||||||||  ||| ||||||| |||| ||||||  |||  |||||||||| |   |||||| || |||||||| |||||||||    
T  14523519 caacatttattattattttccattattatatccttattaattgaatttcatctaacttaactactccac---taactacaattaataaggatattttagt 14523423  T
Q  805 aaatgacatatattttacaattaaaatcaacactactaataatttacttaataa 858  Q
    |||||| ||  ||||||| ||| |||||||||| |  ||| |||| ||||||||    
T  14523422 aaatgatattaattttaccattgaaatcaacacaaaaaatcatttccttaataa 14523369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 674 - 753
Target Start/End: Complemental strand, 38449297 - 38449218
Alignment:
Q  674 tcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcattt 753  Q
    |||||| |||||||  ||||| ||||| |||||||| ||||||||| |||   | |||||||||||||||||||||||||    
T  38449297 tcaaattatttgtctattttacaataccaatacaacatttattattttttgtaactaacatacccttatttattgcattt 38449218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 690 - 752
Target Start/End: Complemental strand, 5050772 - 5050710
Alignment:
Q  690 ttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatt 752  Q
    ||||| ||| |||||||||| ||||||| ||||||||  ||||||||| ||||||||||||||    
T  5050772 ttttacaattcaaatacaacatttattactcttttcctctaacatacctttatttattgcatt 5050710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 766 - 863
Target Start/End: Original strand, 16463713 - 16463810
Alignment:
Q  766 tactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||| ||||| |||||| || |||||||||| ||||||||||||| |   ||||||| || ||||||||||| | |||| |||| |||||||| ||||    
T  16463713 tactactccactaactacaattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcatttccttaataaccgtg 16463810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 794 - 863
Target Start/End: Original strand, 19937729 - 19937798
Alignment:
Q  794 ggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||||||||||| ||  ||||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  19937729 ggtattttagtaaatgatattaattttaccattgaaatcaacacaattaatcatttccttaataatcgtg 19937798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 737 - 836
Target Start/End: Complemental strand, 33407089 - 33406993
Alignment:
Q  737 ccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaaca 836  Q
    ||||||||||||||||||| | | ||||||| ||| |   ||||||||| |||||| ||| |||  |||||||| | ||||||||| |||||||||||||    
T  33407089 ccttatttattgcatttcactcatctaactaatccac---taactataattaataatggtgtttcggtaaatgaaacatattttaccattaaaatcaaca 33406993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 681 - 726
Target Start/End: Original strand, 38763503 - 38763548
Alignment:
Q  681 atttgtcccttttataatacaaatacaacttttattattcttttcc 726  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||    
T  38763503 atttgtcccttttataataccaatacaacatttattatccttttcc 38763548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 815 - 870
Target Start/End: Original strand, 23492978 - 23493033
Alignment:
Q  815 tattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaact 870  Q
    |||||||| |||||||||||||||  |||| ||||  |||||||||||||||||||    
T  23492978 tattttaccattaaaatcaacactgttaatcatttttttaataatcgtgtaaaact 23493033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 777 - 839
Target Start/End: Original strand, 9246023 - 9246085
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacacta 839  Q
    |||| |||| ||| ||| || ||||||||||||| ||| ||||||| ||||||||||||||||    
T  9246023 taacaataattaacaagagtcttttagtaaatgatatacattttaccattaaaatcaacacta 9246085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 777 - 863
Target Start/End: Original strand, 17695365 - 17695451
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||| |||||||  |||||| |||||||| ||  ||||||| ||| ||||||| || | |||| |||| |||||||||||||    
T  17695365 taactataattaataagaatatttttgtaaatgatatcaattttaccattgaaatcaatacaattaatcatttccttaataatcgtg 17695451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 808
Target Start/End: Original strand, 29189970 - 29190003
Alignment:
Q  775 attaactataactaataagggtattttagtaaat 808  Q
    |||||||||||||||||||||| |||||||||||    
T  29189970 attaactataactaataagggtgttttagtaaat 29190003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 790 - 863
Target Start/End: Complemental strand, 31448758 - 31448685
Alignment:
Q  790 taagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||| ||||||||||||||    ||||||| || ||||||||||| | |||| |||| |||||||||||||    
T  31448758 taagggtgttttagtaaatgactctaattttaccatcaaaatcaacacaattaatcatttccttaataatcgtg 31448685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 646 - 759
Target Start/End: Original strand, 27882934 - 27883049
Alignment:
Q  646 taggtgtcctctttacta--tttttctatctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatt 743  Q
    |||||||||||||| |||  ||||| | |||||||| ||||||| |||||||||||| |||||||| ||| |||||||||| |||| |||||||||||||    
T  27882934 taggtgtcctcttttctaattttttttttctcaaatgatttgtcacttttataataccaatacaacattttttattctttttcattcacatacccttatt 27883033  T
Q  744 tattgcatttcaataa 759  Q
    ||||||||||||||||    
T  27883034 tattgcatttcaataa 27883049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 646 - 759
Target Start/End: Original strand, 28023114 - 28023229
Alignment:
Q  646 taggtgtcctctttacta--tttttctatctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatt 743  Q
    |||||||||||||| |||  ||||| | |||||||| ||||||| |||||||||||| |||||||| ||| |||||||||| |||| |||||||||||||    
T  28023114 taggtgtcctcttttctaattttttttttctcaaatgatttgtcacttttataataccaatacaacattttttattctttttcattcacatacccttatt 28023213  T
Q  744 tattgcatttcaataa 759  Q
    ||||||||||||||||    
T  28023214 tattgcatttcaataa 28023229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 672 - 874
Target Start/End: Complemental strand, 3117205 - 3117004
Alignment:
Q  672 tctcaaatcatttgtcccttttataataca--aatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactact 769  Q
    |||||||| |||||||||||||| |||| |  |||||||| |||||||||||||||||  |||||  |||||||||||||||||| ||   || |  |||    
T  3117205 tctcaaattatttgtcccttttacaatataccaatacaacatttattattcttttccaccaacattgccttatttattgcatttcgatcctct-ataact 3117107  T
Q  770 cctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaac 869  Q
     ||||||||||||||| ||| |||||| ||||||||||||||  | ||||||| ||| |||||||||||| |||| ||||  ||||||  | ||||||||    
T  3117106 actccattaactataattaacaagggtgttttagtaaatgac--acattttaccattgaaatcaacactattaatcatttcgttaatacccatgtaaaac 3117009  T
Q  870 tcaaa 874  Q
    |||||    
T  3117008 tcaaa 3117004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 646 - 757
Target Start/End: Original strand, 27966145 - 27966258
Alignment:
Q  646 taggtgtcctctttactatttttctat--ctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatt 743  Q
    |||||||||||||| ||| |||||| |  ||||||| ||||||| |||||||||||| |||||||| ||| |||||||||| |||| |||||||||||||    
T  27966145 taggtgtcctcttttctaattttctttttctcaaatgatttgtctcttttataataccaatacaacattttttattctttttcattgacatacccttatt 27966244  T
Q  744 tattgcatttcaat 757  Q
    ||||||||||||||    
T  27966245 tattgcatttcaat 27966258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 646 - 756
Target Start/End: Original strand, 27870768 - 27870880
Alignment:
Q  646 taggtgtcctctttactatttttctat--ctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatt 743  Q
    |||||||||||||| ||| |||||| |  ||||||| ||||||| |||||||||||  |||||||  ||| ||||||||||||||| | |||||||||||    
T  27870768 taggtgtcctcttttctaattttctttgtctcaaatgatttgtctcttttataatatcaatacaatattttttattcttttccattcatatacccttatt 27870867  T
Q  744 tattgcatttcaa 756  Q
    |||||||||||||    
T  27870868 tattgcatttcaa 27870880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 644 - 770
Target Start/End: Original strand, 8740881 - 8741009
Alignment:
Q  644 aataggtgtcctctttactatttttctatctc--aaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacataccctta 741  Q
    |||||||| | |||||||||||||||| | ||  |||| |||||||||||||| ||||  |||||||||||||||||| ||||  |  ||||||||||||    
T  8740881 aataggtgacatctttactatttttctttgtctaaaattatttgtcccttttacaatatcaatacaacttttattattatttttgacaaacataccctta 8740980  T
Q  742 tttattgcatttcaataagctaactactc 770  Q
    || | ||||||||||| | ||||||||||    
T  8740981 ttaaatgcatttcaatcatctaactactc 8741009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 672 - 854
Target Start/End: Complemental strand, 5879174 - 5878993
Alignment:
Q  672 tctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcc 771  Q
    |||||||| |||||||||||||||||||| |||| ||  ||||||| | ||||| | ||| |||| |||||||||||||||||||| | || |  | |      
T  5879174 tctcaaattatttgtcccttttataataccaatataatatttattacttttttcgactaaaatactcttatttattgcatttcaatcatct-ataattat 5879076  T
Q  772 tccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttactta 854  Q
    |||| |||| |||| ||||||  || ||||||| ||||| | ||||||||| ||||||||||||| || |||| |||| ||||    
T  5879075 tccactaaccataattaataaatgtgttttagtgaatgatacatattttaccattaaaatcaacaatattaatcatttcctta 5878993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 780 - 874
Target Start/End: Original strand, 8979136 - 8979230
Alignment:
Q  780 ctataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaa 874  Q
    ||||||||||||||||||||  ||||||| ||| ||||||||  ||||||||||||| || |||||||||  |||||||||| |||||| |||||    
T  8979136 ctataactaataagggtattcgagtaaataacagatattttatcattaaaatcaacattattaataatttctttaataatcgcgtaaaattcaaa 8979230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 772 - 873
Target Start/End: Original strand, 11649638 - 11649739
Alignment:
Q  772 tccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactc 871  Q
    ||||||||| |||| |||||||||| ||||||||||||| | | ||||||  |||||||||||| ||| |||| ||||  ||||||| ||||||||||||    
T  11649638 tccattaaccataattaataagggtgttttagtaaatgatacacattttattattaaaatcaaccctattaattatttttttaataaccgtgtaaaactc 11649737  T
Q  872 aa 873  Q
    ||    
T  11649738 aa 11649739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 655 - 757
Target Start/End: Complemental strand, 12899989 - 12899885
Alignment:
Q  655 tctttactatttttctatct--caaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatt 752  Q
    |||||||||||||||| | |  ||||| ||||||| | ||||||||||||||||||  |||||||||  |||||| |||||||||||||||||||  |||    
T  12899989 tctttactatttttctttgtatcaaattatttgtcacctttataatacaaatacaatatttattattaatttccactaacatacccttatttattatatt 12899890  T
Q  753 tcaat 757  Q
    |||||    
T  12899889 tcaat 12899885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 762 - 863
Target Start/End: Complemental strand, 42972604 - 42972503
Alignment:
Q  762 taactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcg 861  Q
    |||||||  ||||| ||||||||| ||||||||||||||||||||| || ||  ||||||| ||| ||||||| || | |||| |||| |||||||||||    
T  42972604 taactacgtctccactaactataattaataagggtattttagtaaacgatattaattttaccattgaaatcaaaacaattaatcattttcttaataatcg 42972505  T
Q  862 tg 863  Q
    ||    
T  42972504 tg 42972503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 781 - 860
Target Start/End: Complemental strand, 7703233 - 7703154
Alignment:
Q  781 tataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatc 860  Q
    ||||| |||||||||||||||||||||||| ||  ||||||| ||| |||||||||| | |||| |||| ||||||||||    
T  7703233 tataattaataagggtattttagtaaatgatattaattttaccattgaaatcaacacaattaattatttccttaataatc 7703154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 690 - 831
Target Start/End: Original strand, 11622915 - 11623053
Alignment:
Q  690 ttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaa 789  Q
    ||||||||||  |||||||| ||||||  ||||||   |||||||| |||||||||||| |||||||||| |||| ||||||||   |||||| || |||    
T  11622915 ttttataatatcaatacaacatttatttatcttttatgttaacatatccttatttattgtatttcaataatctaaatactcctc---taactagaattaa 11623011  T
Q  790 taagggtattttagtaaatgacatatattttacaattaaaat 831  Q
     || | | ||||||||||| | | ||||||||| ||||||||    
T  11623012 caatgatgttttagtaaataaaaaatattttacgattaaaat 11623053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 771 - 862
Target Start/End: Original strand, 31271050 - 31271141
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgt 862  Q
    ||||| ||||||||| ||||||| ||||||||||| |||| ||  ||||||| |||||||||||||| |  ||| |||| ||||||||||||    
T  31271050 ctccactaactataattaataagagtattttagtatatgatattaattttaccattaaaatcaacacaatcaatcattttcttaataatcgt 31271141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 798 - 896
Target Start/End: Original strand, 8741083 - 8741181
Alignment:
Q  798 ttttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaagagatacctattatgggacgg 896  Q
    ||||||||||||| | | ||||||| || ||||| | ||| |||||| |||| |||||||| |||||||||||||||||||| || |||| || |||||    
T  8741083 ttttagtaaatgaaacacattttaccatcaaaattagcaccactaatcattttcttaataaccgtgtaaaactcaaaagagacacttattttgagacgg 8741181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 777 - 857
Target Start/End: Complemental strand, 7672422 - 7672342
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaata 857  Q
    ||||||||| |||||||| ||||||||||||| | | | ||||||| ||||||||||||| |  ||||||||| |||||||    
T  7672422 taactataattaataaggatattttagtaaataaaacacattttactattaaaatcaacatttttaataattttcttaata 7672342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 863
Target Start/End: Complemental strand, 9300200 - 9300108
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || |||||||||| ||||||||||||  ||  ||||||| |||||||||||||| |  ||| |||| |||||||||||||    
T  9300200 ctccactaactaaaattaataagggtgttttagtaaatgctattaattttaccattaaaatcaacacaaacaatcattttcttaataatcgtg 9300108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 711 - 755
Target Start/End: Original strand, 17654534 - 17654578
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttca 755  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||    
T  17654534 tttattattcttttccactaacatacccttatttattgtatttca 17654578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 798 - 874
Target Start/End: Original strand, 28073531 - 28073607
Alignment:
Q  798 ttttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaa 874  Q
    ||||||||||| | | |||||||| |||||||||||| |||| |||| |||| |||||||| | |||||||||||||    
T  28073531 ttttagtaaattatacatattttagaattaaaatcaaaactattaattatttccttaataaccatgtaaaactcaaa 28073607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 715 - 757
Target Start/End: Original strand, 27976629 - 27976671
Alignment:
Q  715 ttattcttttccattaacatacccttatttattgcatttcaat 757  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  27976629 ttattcctttccattcacatacccttatttattgcatttcaat 27976671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 715 - 757
Target Start/End: Original strand, 28033898 - 28033940
Alignment:
Q  715 ttattcttttccattaacatacccttatttattgcatttcaat 757  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  28033898 ttattcctttccattcacatacccttatttattgcatttcaat 28033940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 29855191 - 29855229
Alignment:
Q  360 ttgaatgtaatcacatgtgtcagtgtcatgttggtgtca 398  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  29855191 ttgaatgtaatcacatgtgtcagtgtcatcttggtgtca 29855229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 757
Target Start/End: Original strand, 28072474 - 28072559
Alignment:
Q  673 ctcaaatcatttgtcccttttataatacaaatacaacttttattattctt-ttccattaacatacccttatttattgcatttcaat 757  Q
    ||||||| ||||||| |||||||||||   ||||||  ||||||||| || ||||| ||||||||||| |||||||| ||||||||    
T  28072474 ctcaaattatttgtctcttttataatatcgatacaatatttattatttttattccactaacataccctaatttattgtatttcaat 28072559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 798 - 882
Target Start/End: Complemental strand, 29806341 - 29806257
Alignment:
Q  798 ttttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaagagatac 882  Q
    ||||||||||||| | | | ||| ||| ||||||||||||||||||| |||| |||||||| | |  ||||||||||| ||||||    
T  29806341 ttttagtaaatgaaacacacttttcaaataaaatcaacactactaatcatttccttaataaccttacaaaactcaaaatagatac 29806257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 813 - 872
Target Start/End: Complemental strand, 28072182 - 28072123
Alignment:
Q  813 tatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactca 872  Q
    |||||||| | |||||||||||||||| |||| |||| |||||||| | |||||||||||    
T  28072182 tatattttgccattaaaatcaacactattaatcatttccttaataaccatgtaaaactca 28072123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 753
Target Start/End: Complemental strand, 44225839 - 44225776
Alignment:
Q  690 ttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcattt 753  Q
    |||||||||||||||| ||  ||||||||| ||||||| ||||||||  | |||||||||||||    
T  44225839 ttttataatacaaatataaaatttattattgttttccactaacatacattaatttattgcattt 44225776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 777 - 863
Target Start/End: Complemental strand, 1875673 - 1875587
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||||| || |||||||||| ||||||||||||  |   ||||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  1875673 taactacaattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttccttaataatcgtg 1875587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 711 - 757
Target Start/End: Original strand, 9015726 - 9015772
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttcaat 757  Q
    ||||||||||||| |||||||||||   |||||||||||||||||||    
T  9015726 tttattattctttaccattaacatatatttatttattgcatttcaat 9015772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 690 - 748
Target Start/End: Original strand, 31231680 - 31231738
Alignment:
Q  690 ttttataatacaaatacaacttttattattcttttccattaacatacccttatttattg 748  Q
    ||||||||||| ||| || | ||||||||| ||||||||||  ||||||||||||||||    
T  31231680 ttttataataccaatgcatcatttattatttttttccattataatacccttatttattg 31231738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 672 - 757
Target Start/End: Original strand, 34280992 - 34281075
Alignment:
Q  672 tctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaat 757  Q
    |||||||| | |||||  |||||||||| ||||| ||  ||||||||| |||  |||||||||  |||||||||||||||||||||    
T  34280992 tctcaaattacttgtctattttataatataaatataatatttattatttttt--cattaacatgtccttatttattgcatttcaat 34281075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 849
Target Start/End: Original strand, 136806 - 136883
Alignment:
Q  772 tccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataattt 849  Q
    |||| ||||||||| ||||||  ||  ||||||||| |||| ||||||||  |||||||||||||||| |||| ||||    
T  136806 tccactaactataattaataaaagtggtttagtaaacgacaaatattttattattaaaatcaacactattaatcattt 136883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 757
Target Start/End: Original strand, 2598335 - 2598419
Alignment:
Q  672 tctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaat 757  Q
    |||||||| |||||||| |||| | |||| |||||||| || |||| | || |||| ||||| |||||||||||||||| ||||||    
T  2598335 tctcaaattatttgtcctttttgtgataccaatacaacatt-attacttttgtccactaacacacccttatttattgcacttcaat 2598419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 781 - 845
Target Start/End: Original strand, 9795706 - 9795771
Alignment:
Q  781 tataactaataagggtattttagtaaa-tgacatatattttacaattaaaatcaacactactaata 845  Q
    ||||| |||||| | ||||||| |||| ||| | |||||||||||||||||| |||||||||||||    
T  9795706 tataattaataaagatattttaataaaatgaaacatattttacaattaaaattaacactactaata 9795771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 777 - 834
Target Start/End: Complemental strand, 18842453 - 18842396
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaa 834  Q
    ||||||||  ||||||| |||||||| ||| ||| ||||||||||| |||||||||||    
T  18842453 taactatagttaataagagtattttaataattgaaatatattttaccattaaaatcaa 18842396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 722
Target Start/End: Original strand, 27134490 - 27134531
Alignment:
Q  681 atttgtcccttttataatacaaatacaacttttattattctt 722  Q
    |||||||||||| ||||||| |||||||| ||||||||||||    
T  27134490 atttgtccctttaataataccaatacaacatttattattctt 27134531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 798 - 863
Target Start/End: Original strand, 36967417 - 36967482
Alignment:
Q  798 ttttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||||||| ||  ||||||| || ||||||||||| | |||| |||| |||||||||||||    
T  36967417 ttttagtaaatgatattaattttaccatcaaaatcaacacaattaatcatttccttaataatcgtg 36967482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 672 - 874
Target Start/End: Original strand, 39213277 - 39213481
Alignment:
Q  672 tctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcc 771  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||| |||||| |||||||||| ||  ||||||| | || |  ||| |    
T  39213277 tctcaaattatttgtcccttttataataccaatacaacatttattatttttttccactaacatgcccttatttaatgtttttcaatcatct-ataactac 39213375  T
Q  772 tccattaactataactaataagggtattttagtaaatgacatatattttacaattaaa---atcaacactactaataatttacttaataatcgtgtaaaa 868  Q
    |||| ||||||||| ||||||| || ||||| |||| || | ||||||| | ||||||   ||||||  || |||| |||| |||||||| |||||||||    
T  39213376 tccactaactataattaataagagtgttttattaaaggatacatattttgccattaaaatcatcaacgttattaatcatttccttaataaccgtgtaaaa 39213475  T
Q  869 ctcaaa 874  Q
     |||||    
T  39213476 ttcaaa 39213481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 796 - 879
Target Start/End: Original strand, 9637873 - 9637956
Alignment:
Q  796 tattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaagaga 879  Q
    ||||||||||||||||| ||||||||  ||||||||||||| || |||| |||| ||||||| |||| ||||||||||| ||||    
T  9637873 tattttagtaaatgacacatattttatcattaaaatcaacattattaatcatttccttaatactcgtataaaactcaaatgaga 9637956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 796 - 873
Target Start/End: Original strand, 40955848 - 40955925
Alignment:
Q  796 tattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaa 873  Q
    ||||||||||||||| |||| |||||  ||||||||||||| || |||| ||||| ||||||||||| ||||||||||    
T  40955848 tattttagtaaatgatatattttttatcattaaaatcaacattattaatcatttatttaataatcgtataaaactcaa 40955925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 640 - 757
Target Start/End: Original strand, 17967080 - 17967199
Alignment:
Q  640 tcataataggtgtcctctttactatttttctatctc--aaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacc 737  Q
    |||||||||||||||||||| ||||| || | | |   |||| |||||||  ||||||||||| ||| ||   |||||||||||||| || ||||||| |    
T  17967080 tcataataggtgtcctctttcctattcttatttgtataaaattatttgtcatttttataatactaatgcataatttattattctttttcactaacatatc 17967179  T
Q  738 cttatttattgcatttcaat 757  Q
    ||||||||||||||||||||    
T  17967180 cttatttattgcatttcaat 17967199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 672 - 759
Target Start/End: Original strand, 5731708 - 5731794
Alignment:
Q  672 tctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataa 759  Q
    |||||||| |||||||||||||| ||||  |||||||  ||||||||| ||||  ||||||||| | |||||||||||||||||||||    
T  5731708 tctcaaattatttgtcccttttacaatatcaatacaatatttattatt-tttttgattaacatatcattatttattgcatttcaataa 5731794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 691 - 861
Target Start/End: Complemental strand, 6315939 - 6315771
Alignment:
Q  691 tttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaat 790  Q
    |||| ||||| ||| |||| ||||||||| ||||||||||  |||||||||||||||| ||||||   | || |  ||| || || |||||| || ||||    
T  6315939 tttagaataccaatgcaacatttattattattttccattattatacccttatttattgaatttcatccaactta--actacttcactaactacaattaat 6315842  T
Q  791 aagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcg 861  Q
    |||||||||||||||||||| ||  ||||||  ||| |||| ||||| |  ||| |||| |||||||||||    
T  6315841 aagggtattttagtaaatgatattaattttatcattgaaattaacacaatcaatcatttccttaataatcg 6315771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 777 - 863
Target Start/End: Complemental strand, 1248682 - 1248596
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||||| || |||||||||||||||||||||||| ||  ||||||| ||| |||||||||  | ||||||||| |||||||| ||||    
T  1248682 taactacaattaataagggtattttagtaaatgatattaattttaccattgaaatcaacataattaataatttccttaataaccgtg 1248596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 691 - 836
Target Start/End: Original strand, 6753980 - 6754123
Alignment:
Q  691 tttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaat 790  Q
    |||||||||| ||| |||| ||| || || |||||||| || |||||||||||||||| ||||||   | || |  ||| ||||| |||||| || ||||    
T  6753980 tttataataccaatgcaacattttttttttttttccatcaatatacccttatttattgaatttcatccaactta--actactccactaactacaattaat 6754077  T
Q  791 aagggtattttagtaaatgacatatattttacaattaaaatcaaca 836  Q
    ||| || ||||||||||||||||  ||||||| ||| |||||||||    
T  6754078 aagagtgttttagtaaatgacattaattttactattgaaatcaaca 6754123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 771 - 865
Target Start/End: Complemental strand, 7828010 - 7827916
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgta 865  Q
    ||||| |||||| || |||||||||||||||| ||||||| |   ||||||| ||| |||||||||| | |||| |||| |||||||||||||||    
T  7828010 ctccactaactacaattaataagggtattttaataaatgatactaattttaccattgaaatcaacacaattaattattttcttaataatcgtgta 7827916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 672 - 757
Target Start/End: Complemental strand, 28225178 - 28225093
Alignment:
Q  672 tctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaat 757  Q
    |||||||| ||||||| |||||| ||||  ||||||||  |||||||||||| || ||| |||||  |||||||||||||||||||    
T  28225178 tctcaaattatttgtctcttttacaataacaatacaacacttattattctttccctttaccatacatttatttattgcatttcaat 28225093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 771 - 863
Target Start/End: Original strand, 4818580 - 4818672
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || |||||||||| ||||||||||||  |   ||||||||||| |||||||||| | |||| |||| |||||||||||||    
T  4818580 ctccactaactacaattaataagggtgttttagtaaatgctactaattttacaattgaaatcaacacaattaattatttccttaataatcgtg 4818672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 771 - 837
Target Start/End: Original strand, 27580629 - 27580695
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacac 837  Q
    ||||| |||||| || |||||||||||||||||||||||| ||  ||||||| ||| ||||||||||    
T  27580629 ctccactaactacaattaataagggtattttagtaaatgatattaattttaccattgaaatcaacac 27580695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 863
Target Start/End: Complemental strand, 8725093 - 8725001
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || ||||||| || ||||||||||||| ||  ||||||| ||| |||||||||| | |||| ||||  ||||||||||||    
T  8725093 ctccactaactacaattaataagtgtgttttagtaaatgatattaattttaccattgaaatcaacacaattaatcatttctttaataatcgtg 8725001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 691 - 755
Target Start/End: Original strand, 19929897 - 19929961
Alignment:
Q  691 tttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttca 755  Q
    |||| ||||| ||| |||| ||||||||| ||||||||||  |||||||||||||||| ||||||    
T  19929897 tttagaataccaatgcaacatttattattattttccattattatacccttatttattgaatttca 19929961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 863
Target Start/End: Original strand, 27542824 - 27542916
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || ||||||| |||||||||||||||  ||  ||||||| ||| |||||||||| |  ||| |||| |||||||||||||    
T  27542824 ctccactaactacaattaataagagtattttagtaaatggtattaattttaccattgaaatcaacacaatcaatcatttccttaataatcgtg 27542916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 863
Target Start/End: Complemental strand, 40530308 - 40530216
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||| |||||| || |||||||||| ||||||||||||  |   ||||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  40530308 ctccactaactacaattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatcattttcttaataatcgtg 40530216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 691 - 755
Target Start/End: Original strand, 41496031 - 41496095
Alignment:
Q  691 tttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttca 755  Q
    |||| ||||| ||| |||| ||||||||||||||||| ||  ||||| |||||||||||||||||    
T  41496031 tttacaatactaatgcaacatttattattcttttccactattatacctttatttattgcatttca 41496095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 862
Target Start/End: Original strand, 31655082 - 31655173
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgt 862  Q
    ||||| |||||| || |||||||| |||| |||||||||| ||  ||||||| ||| |||||||||| | |||| ||||  |||||||||||    
T  31655082 ctccactaactacaattaataaggatattatagtaaatgatattaattttaccattgaaatcaacacaattaatcatttctttaataatcgt 31655173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 716
Target Start/End: Original strand, 33537463 - 33537543
Alignment:
Q  638 tctcataataggtgtcctctttactatttttctat--ctcaaatcatttgtcccttttataatacaaatacaacttttatt 716  Q
    ||||| |||||||||   ||||||||||||||| |  ||||||| ||||||| |||||||||||| |||| ||| ||||||    
T  33537463 tctcaaaataggtgtttcctttactatttttctttgtctcaaattatttgtctcttttataataccaatataacatttatt 33537543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 721 - 872
Target Start/End: Original strand, 49176897 - 49177047
Alignment:
Q  721 ttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatatttt 820  Q
    ||||||||||||||||| ||||||| | |||||||||   |||   ||| ||| ||||||||||| ||||||| |||||||||||||||||| |||||||    
T  49176897 ttttccattaacatacctttatttagtacatttcaatcgtctata-actactctattaactataattaataagagtattttagtaaatgacacatatttt 49176995  T
Q  821 acaattaaaatcaacactactaataatttacttaataatcgtgtaaaactca 872  Q
    ||  || ||||||||| || |||| |||| |||||||  ||| |||||||||    
T  49176996 acctttgaaatcaacattattaattatttccttaatacccgtataaaactca 49177047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 646 - 896
Target Start/End: Original strand, 44122132 - 44122369
Alignment:
Q  646 taggtgtcctctttactatttttctat---ctcaaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttat 742  Q
    |||||||||||||| |||||||| | |   ||||||| ||||||||||||||||||||||||||| | ||     || ||||||| ||||||||||||||    
T  44122132 taggtgtcctctttcctattttttttttgtctcaaattatttgtcccttttataatacaaatacatcatt-----tttttttccactaacatacccttat 44122226  T
Q  743 ttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaa--atgacatatattttacaattaaaatcaacactac 840  Q
    ||||||||||||||| | |||             ||||||||| |||||||||| |||||||||  |||| | ||||||| | ||||||||||||||||     
T  44122227 ttattgcatttcaatcatcta-------------taactataattaataagggtgttttagtaaatatgatacatatttttccattaaaatcaacactat 44122313  T
Q  841 taataatttacttaataatcgtgtaaaactcaaaagagatacctattatgggacgg 896  Q
    |||| ||||  ||| |||  ||||||| |||||| | || ||||| |||| |||||    
T  44122314 taatcatttctttagtaactgtgtaaatctcaaatgggacacctaatatgagacgg 44122369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 649 - 767
Target Start/End: Complemental strand, 10588054 - 10587934
Alignment:
Q  649 gtgtcctctttactatttttctatctc--aaatcatttgtcccttttataatacaaatacaacttttattattcttttccattaacatacccttatttat 746  Q
    |||||||||||| ||||||||| | ||  |||| |||  ||||||||| ||||| |||||||| |||||||||||||| || ||| |||| |||||||||    
T  10588054 gtgtcctctttagtatttttctttgtcttaaattattgatcccttttaaaatactaatacaacatttattattctttttcactaatatactcttatttat 10587955  T
Q  747 tgcatttcaataagctaacta 767  Q
    ||||||||||| | |||||||    
T  10587954 tgcatttcaatcatctaacta 10587934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 733 - 860
Target Start/End: Original strand, 30902959 - 30903088
Alignment:
Q  733 atacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatc 832  Q
    ||||||||||||||||||||||||| | |||| || |||||   ||| | ||| | |||||||||||||||||||| | |||||||||||||||||||||    
T  30902959 atacccttatttattgcatttcaatcatctaaatattcctc---taatt-taatttataagggtattttagtaaattaaatatattttacaattaaaatc 30903054  T
Q  833 aa------cactactaataatttacttaataatc 860  Q
    ||      |||||||||| |||| ||||||||||    
T  30903055 aaaatcagcactactaattattttcttaataatc 30903088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 711 - 863
Target Start/End: Original strand, 7759186 - 7759336
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatga 810  Q
    ||||||||| ||||||||||  |||||||||||||||| |||||| | | || |  |||  |||| |||||| || ||||||| ||||||||||||||||    
T  7759186 tttattatttttttccattattatacccttatttattgaatttcattcaactta--actattccactaactacaattaataagagtattttagtaaatga 7759283  T
Q  811 catatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
     ||  |||| || ||| |||||||||| | |||| ||||  ||||||||||||    
T  7759284 tattaatttcaccattgaaatcaacacaattaattatttttttaataatcgtg 7759336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 706 - 858
Target Start/End: Complemental strand, 40144999 - 40144849
Alignment:
Q  706 caacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagta 805  Q
    |||| ||||||||| ||| ||||||  |||||||||||||||| | ||||   | || |  ||| |||||||||||| || |||||||||| ||||||||    
T  40144999 caacatttattattttttcccattataatacccttatttattgaacttcatccaactta--actactccattaactacaattaataagggtgttttagta 40144902  T
Q  806 aatgacatatattttacaattaaaatcaacactactaataatttacttaataa 858  Q
    ||||| ||  ||||||| || ||||||||||| | |||| |||| ||||||||    
T  40144901 aatgatattaattttaccatcaaaatcaacacaattaatcattttcttaataa 40144849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 762 - 863
Target Start/End: Original strand, 45331361 - 45331462
Alignment:
Q  762 taactactcctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcg 861  Q
    |||||| |||||||||||||| || |||||||||| ||||||||||||| ||  ||||||| || ||||||||||  | |||| |||| |||||||| ||    
T  45331361 taactattcctccattaactacaattaataagggtgttttagtaaatgatattaattttaccatcaaaatcaacataattaattattttcttaataaccg 45331460  T
Q  862 tg 863  Q
    ||    
T  45331461 tg 45331462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 711 - 837
Target Start/End: Complemental strand, 7957424 - 7957302
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagtaaatga 810  Q
    |||||||||||||| || ||||| ||  |||||||||| |||||||| | |||||||   ||||||||| ||||| || ||| ||||||||||||||| |    
T  7957424 tttattattctttttcactaacacacttttatttattgtatttcaattatctaacta---ctccattaattataattagtaa-ggtattttagtaaatta 7957329  T
Q  811 catatattttacaattaaaatcaacac 837  Q
     | |||||||||  |||||||||||||    
T  7957328 aacatattttacctttaaaatcaacac 7957302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 696 - 863
Target Start/End: Complemental strand, 32826155 - 32825989
Alignment:
Q  696 aatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagct-aactactcctccattaactataactaataagg 794  Q
    ||||| |||||||| ||||||||| ||||||||||  |||||||||||||||| | ||||   | || ||||||||||||| ||| || || |||||| |    
T  32826155 aataccaatacaacatttattatt-ttttccattataatacccttatttattgaacttcatccaacttaactactcctccactaattacaattaataaag 32826057  T
Q  795 gtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    || ||||||||||||| |   ||||||| || ||||||||||| | |||| |||| |||||||| ||||    
T  32826056 gtgttttagtaaatgatactaattttaccatcaaaatcaacac-attaatcatttccttaataaccgtg 32825989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 704 - 879
Target Start/End: Original strand, 11642133 - 11642302
Alignment:
Q  704 tacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttag 803  Q
    |||||| ||||||||||||||||| ||| ||||  |||||||||| ||||| || |  || |  || ||| | ||||||||| ||||||  || ||||||    
T  11642133 tacaacatttattattcttttccactaatatacaattatttattgtatttcgatcatgta-cagctactctactaactataattaataaatgtgttttag 11642231  T
Q  804 taaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaagaga 879  Q
    |||||     ||||||||| ||||||||||||| || |||| |||| |||||||| | ||||||||||||| ||||    
T  11642232 taaat-----atattttaccattaaaatcaacaatattaatcattttcttaataaccatgtaaaactcaaatgaga 11642302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 777 - 863
Target Start/End: Original strand, 917059 - 917145
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||||| || |||||||||||||||||||||||| ||  ||||||| ||| |||||||||  | |||| ||||| ||||||||||||    
T  917059 taactacaattaataagggtattttagtaaatgatattaattttaccatttaaatcaacataattaatcatttatttaataatcgtg 917145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 777 - 863
Target Start/End: Complemental strand, 30755024 - 30754938
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||| |||||| | ||||||||||||| | ||| |||||||  ||||||||||||| | |||| |||| |||||||||||||    
T  30755024 taactataattaataatgatattttagtaaataatataaattttacccttaaaatcaacacaattaatcatttccttaataatcgtg 30754938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 706 - 863
Target Start/End: Original strand, 39864077 - 39864232
Alignment:
Q  706 caacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtattttagta 805  Q
    |||| ||||||||| ||||||| ||  |||||||||||||||| ||||||   | || |  ||| ||||| |||||| || ||||||| |||||||||||    
T  39864077 caacatttattatttttttccactattatacccttatttattgaatttcatccaactta--actactccactaactacaattaataagagtattttagta 39864174  T
Q  806 aatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||  |   ||||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  39864175 aatgctactaattttaccattgaaatcaacacaattaatcatttccttaataatcgtg 39864232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 798 - 874
Target Start/End: Complemental strand, 15444543 - 15444467
Alignment:
Q  798 ttttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaa 874  Q
    ||||||||||| | | ||||||||| |||||||||||||||| |||| |||| |||||||| | | |||||||||||    
T  15444543 ttttagtaaataatacatattttaccattaaaatcaacactattaatcatttccttaataaccatataaaactcaaa 15444467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 802 - 874
Target Start/End: Original strand, 50071262 - 50071334
Alignment:
Q  802 agtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaa 874  Q
    ||||||||||| |||||||||||||||||| || |||| |||| | ||  |||||| ||||||||||||||||    
T  50071262 agtaaatgacacatattttacaattaaaattaatactattaattactttattaatattcgtgtaaaactcaaa 50071334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 777 - 863
Target Start/End: Original strand, 26093429 - 26093515
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    |||||| || |||||||| ||||||| ||||||| ||  ||||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  26093429 taactacaattaataaggatattttaataaatgatattaattttaccattgaaatcaacacaattaatcattttcttaataatcgtg 26093515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 863
Target Start/End: Complemental strand, 31978741 - 31978649
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||||||||| |||||||  || |||||||| ||| ||  ||||||| ||| |||||||||| | ||||  ||| |||||||||||||    
T  31978741 ctccattaactataattaataagaatagtttagtaagtgatattaattttaccattgaaatcaacacaattaatctttttcttaataatcgtg 31978649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 711 - 755
Target Start/End: Complemental strand, 33733409 - 33733365
Alignment:
Q  711 tttattattcttttccattaacatacccttatttattgcatttca 755  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||    
T  33733409 tttattattcttttccattattatacccttatttattgaatttca 33733365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 777 - 860
Target Start/End: Complemental strand, 34031610 - 34031527
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatc 860  Q
    |||||| || |||||| ||||||||||||||||| ||  ||||||| |||  ||||||||| | |||| |||| ||||||||||    
T  34031610 taactacaattaataacggtattttagtaaatgatattaattttaccattggaatcaacacaagtaatcatttccttaataatc 34031527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 702 - 757
Target Start/End: Complemental strand, 39395283 - 39395228
Alignment:
Q  702 aatacaacttttattattcttttccattaacatacccttatttattgcatttcaat 757  Q
    |||||||| |||||||||||||| || ||| |||| |||| |||||||||||||||    
T  39395283 aatacaacatttattattctttttcactaatatactcttacttattgcatttcaat 39395228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 771 - 837
Target Start/End: Original strand, 15699151 - 15699217
Alignment:
Q  771 ctccattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacac 837  Q
    ||||| |||||| || |||||||||| ||||||||||||| ||  ||||||| || |||||||||||    
T  15699151 ctccactaactacaattaataagggtgttttagtaaatgatattaattttaccatcaaaatcaacac 15699217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 777 - 863
Target Start/End: Complemental strand, 23169076 - 23168990
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||| |||||||| | ||||||||||||  |   ||||||| ||| |||||||||| | |||| |||| |||||||||||||    
T  23169076 taactataattaataaggatgttttagtaaatgctactaattttaccattgaaatcaacacaattaattattttcttaataatcgtg 23168990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 794 - 863
Target Start/End: Complemental strand, 16395113 - 16395044
Alignment:
Q  794 ggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||||||||||| |   ||||||| || ||||||||||| | |||| |||| |||||||||||||    
T  16395113 ggtattttagtaaatgatactaattttactatcaaaatcaacacaattaatcattttcttaataatcgtg 16395044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 706 - 755
Target Start/End: Original strand, 37506090 - 37506139
Alignment:
Q  706 caacttttattattcttttccattaacatacccttatttattgcatttca 755  Q
    |||| ||||||||| ||||||||||  |||||||||||||||| ||||||    
T  37506090 caacatttattatttttttccattataatacccttatttattgaatttca 37506139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 777 - 876
Target Start/End: Original strand, 71827 - 71926
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaactcaaaag 876  Q
    |||| |||| ||||| | |||||||||||||| | | ||||||||| ||||||||||||||||||||| |||   ||||| | |||||||||||||||||    
T  71827 taacaataattaatatgagtattttagtaaattaaacatattttactattaaaatcaacactactaatcattcctttaattaccgtgtaaaactcaaaag 71926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 702 - 771
Target Start/End: Original strand, 71426 - 71495
Alignment:
Q  702 aatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcc 771  Q
    |||||||| ||||||||||||||| | ||||||| ||||||||| | ||||||||| | |||||||||||    
T  71426 aatacaacatttattattcttttctactaacatatccttatttaatacatttcaattatctaactactcc 71495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 777 - 863
Target Start/End: Complemental strand, 136117 - 136031
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||| |||||||||| ||||||||||||  ||  ||||||| ||| ||||||||| || |||| ||||| ||||||||||||    
T  136117 taactataattaataagggtgttttagtaaatgctattaattttaccattgaaatcaacattattaatcatttatttaataatcgtg 136031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 690 - 757
Target Start/End: Original strand, 11949 - 12015
Alignment:
Q  690 ttttataatacaaatacaacttttattattcttttccattaacatacccttatttattgcatttcaat 757  Q
    |||||||||||||||| ||  ||||||| | ||||| ||||||||||| |||||||||||||||||||    
T  11949 ttttataatacaaatataaaatttattacttttttc-attaacataccattatttattgcatttcaat 12015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1391 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1391
Description:

Target: scaffold1391; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 777 - 863
Target Start/End: Complemental strand, 1897 - 1811
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||| |||||| ||| ||||||||||||| ||  |||| || || ||||||||||| | |||| |||| |||||||||||||    
T  1897 taactataattaataaaggtgttttagtaaatgatattaatttgactatcaaaatcaacacaattaattattttcttaataatcgtg 1811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 774 - 863
Target Start/End: Original strand, 16130 - 16219
Alignment:
Q  774 cattaactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtg 863  Q
    ||||||||| || ||||||| || ||||||||||||  ||  ||||||  |||||||||||||| | |||| |||| |||||||||||||    
T  16130 cattaactacaattaataagtgtgttttagtaaatgctattaattttatcattaaaatcaacacaattaatcatttccttaataatcgtg 16219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 860
Target Start/End: Complemental strand, 20423 - 20350
Alignment:
Q  787 taataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatc 860  Q
    |||||||||||||||| ||||||| |   |||||||||| ||||||||||| | |||| ||||| |||||||||    
T  20423 taataagggtattttactaaatgatactaattttacaatcaaaatcaacacaattaatcatttaattaataatc 20350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 702 - 865
Target Start/End: Original strand, 5354 - 5513
Alignment:
Q  702 aatacaacttttattattcttttccattaacatacccttatttattgcatttcaataagctaactactcctccattaactataactaataagggtatttt 801  Q
    |||||||| ||||||||| ||||||||||  ||||| |||||||||| ||||||   | || |  ||| ||||| |||||| || |||||||| ||||||    
T  5354 aatacaacatttattatt-ttttccattat-atacctttatttattgaatttcatccaactta--actactccactaactaaaattaataaggatatttt 5449  T
Q  802 agtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgta 865  Q
    ||||||||| ||  ||||||| ||| || |||||||   |||| |||| |||||||||| ||||    
T  5450 agtaaatgatattaattttaccattgaattcaacacagttaatcattttcttaataatcatgta 5513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 777 - 870
Target Start/End: Original strand, 126206 - 126299
Alignment:
Q  777 taactataactaataagggtattttagtaaatgacatatattttacaattaaaatcaacactactaataatttacttaataatcgtgtaaaact 870  Q
    ||||||||| ||| ||  || ||||||||||||| | | |||||   |||||||| ||||||| |||| |||| ||||||||| ||||||||||    
T  126206 taactataattaacaacagtcttttagtaaatgatacacattttgtcattaaaataaacactattaatcatttccttaataattgtgtaaaact 126299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University