View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2792-Insertion-5 (Length: 910)
Name: NF2792-Insertion-5
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2792-Insertion-5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 676; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 8 - 848
Target Start/End: Complemental strand, 1553243 - 1552402
Alignment:
| Q |
8 |
cagataagaaggaagatcccaaaccattcaacacagcaccagatgttgcagctgccatttgtcttctagagataaagagtaatgagactggttttgtagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1553243 |
cagataagaaggaagatcccaaaccattcaacacagcaccagatgttgcagctgccatttgtcttctagagataaagagtaatgagactggttttgtagt |
1553144 |
T |
|
| Q |
108 |
tcacttgggaactgaactgaactagttagagagtattttatgagtgtgtgtgagaatctgaaggggttttcatagaaggccaagtaggacaatgaaatct |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1553143 |
tcacttgggaattgaactgaactagttagagagtattttatgagtgtgtgagagaatctgaaggggttttcatagaaggccaagtaggacaatgaaatct |
1553044 |
T |
|
| Q |
208 |
aaacaagaaatcttaaggtatatcgtggatagattttgggccaataggaaatggatttccatcctcagctgatttggcttccaaccacgtggacactatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1553043 |
aaacaagaaatcttaaggtatatcgtggatagattttggaccaataggaaatggatttccatcctcagctgatttggcttccaaccacgtggacactatg |
1552944 |
T |
|
| Q |
308 |
ttccactccactgtgctctttctatcttttgctattgttgatgttaatttaggtagataaacacaagcaaatgcaaacaaaaaccaatttaatgaagtaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1552943 |
ttccactccactgtgctctttctatcttttgctattgttgatgttaatttaggtagataaacacaagcaaatgcaaacaaaaaccaatttaatgaagtaa |
1552844 |
T |
|
| Q |
408 |
gatgtgtctgtggctctcatcatcggatgtttcttcaccactcaaaaatatggtatcaatatatttactgnnnnnnnnaaac--atatatatctaacaaa |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
1552843 |
gatgtgtctgtggctctcatcatcggatgtttcttcaccactcaaaaatatggtatcaatatatttactgttttttttaaacatatatatatctaacaaa |
1552744 |
T |
|
| Q |
506 |
agcaacnnnnnnntatatctcttcaaagagtaacttgtttggacaccgtccccatgaacataactcagatgatagagataatgtattgttatatatagcg |
605 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||| | |||| ||||||||||||| || ||||||| ||||||||||| ||||| |
|
|
| T |
1552743 |
agcaacaaaaaaa-atatctcttcaaagagtaacttatttggacaccgtctcaatgagcataactcagatggtacagataatctattgttatatgtagcg |
1552645 |
T |
|
| Q |
606 |
ttggagttcgaatctcgtgcatcttatttattcattttaaaaagtgaattcgagtcacagaactattaaac-aaataaaacttgtttagacactattaca |
704 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
1552644 |
ttggagttcgaacctcgtgcattttatttattcattttaaaaagtgaattcgagccacaagactattaaacaaaaaaaaacttgtttagatactattaca |
1552545 |
T |
|
| Q |
705 |
ccatttattttttatttgatattttaaccaaaatgatttgggaattttatctaaaaagtccttgactttaacaaagaccattatctagcaatcgtttagc |
804 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1552544 |
ccatttatttattatttgatattttaacgaaaatgattt-ggaattttatctaaaaagtccttgactttaacaaagaccattatctagcaatcgtttagc |
1552446 |
T |
|
| Q |
805 |
agatgggtgaagaggaaaaaagagaaattatgttggggaaaagg |
848 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
1552445 |
agatgggtgaagaggaaaaaagaaaaattatattggggaaaagg |
1552402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 876 - 906
Target Start/End: Original strand, 1894743 - 1894773
Alignment:
| Q |
876 |
gctaaaatagaatttattaagatagcaatga |
906 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1894743 |
gctaaaatagaatttattaagatagcaatga |
1894773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 924432 - 924385
Alignment:
| Q |
553 |
gtccccatgaacataactcagatgatagagataatgtattgttatata |
600 |
Q |
| |
|
|||||| |||||||| ||||| ||| |||||||||||||||||||||| |
|
|
| T |
924432 |
gtccccgtgaacatatctcagttgacagagataatgtattgttatata |
924385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 877 - 906
Target Start/End: Original strand, 6989159 - 6989188
Alignment:
| Q |
877 |
ctaaaatagaatttattaagatagcaatga |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6989159 |
ctaaaatagaatttattaagatagcaatga |
6989188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University