View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2792-Insertion-6 (Length: 901)
Name: NF2792-Insertion-6
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2792-Insertion-6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 771; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 7 - 901
Target Start/End: Complemental strand, 29175860 - 29174966
Alignment:
| Q |
7 |
actgactgcagtgaatcacagtccctaggatttacattgaaaattgaatttgttttgcgataatctggtggcttgttggtgttgctatagaaattttatt |
106 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29175860 |
actgactgcagtgagtcacagtccctaggatttacattgaaaattgaatttgttttgcgataatctggtggcgtgttggtgttgctatagaaattttatt |
29175761 |
T |
|
| Q |
107 |
agattcccatttaccatggcatccaattatgctaattaatgtttggtataatgttgttaattgtggattgcaaaaaatagcagttcattcaaattccgct |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29175760 |
agattcccatttaccatggcatccaattatgctaattaatgtttggtataatgttgttaattgtggattgcaaaaaacagcagttcattcaaattccgct |
29175661 |
T |
|
| Q |
207 |
ctgcaacagtgttatagagccattcaaattccgctttgcaacagtgttgtagagcctctgtttgacaacattctctctagatagtgtatcgtggaacagc |
306 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29175660 |
ctgcaacagtgttatagagccattcaaattccactttgcaacagtgttatagagcctctgtttgacaacattctctctagatagtgtatcgcggaacagc |
29175561 |
T |
|
| Q |
307 |
agtgatttgttcaaattctgctatggtatagccacatagcactctaacgatgccttttctatcttaactttgaatgatggatatttacttccctatcttg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29175560 |
agtgatttgttcaaattctgctatggtatagccacatagcactctaacgatgccttttctatcttaactttgaatgatggatatttactttcctatcttg |
29175461 |
T |
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| Q |
407 |
tggattgttacacatatatctaaactacccaatgctgtatattggccattgtcctgatatcagacatgttcatgtcctatatgcatgagcacactaa--- |
503 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29175460 |
tggattgtt--acatatatctaaactacccaatgctgcatattggccattgtcctgatatcagacatgttcatgtcctatatgcatgagcacactaattt |
29175363 |
T |
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| Q |
504 |
-atgannnnnnnnatttgaataggagtatccattgaagtgtacaattcctgttttgaacttctattgaactcaatagagcttagtttctagttaaccaaa |
602 |
Q |
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| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
29175362 |
tttttatttatttatttgaataggagtatccattgaagtgtacaa-tcctgttttgaacttctattgaactcaatagagcttcgtttcaagttaaccaaa |
29175264 |
T |
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| Q |
603 |
gtacaaactaaagattcgaccaaaacaaaagtacagacaaaggaggtaacagacaagtacatcactaatgatggcatgtcttgtgttattgtttttcttt |
702 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29175263 |
gtacaaactaaagattcgaccaaaacaaaagtacagacaaaggaggtaacagacaagtacatcactaatgatggcatgtcttgtgttattgtttttcttt |
29175164 |
T |
|
| Q |
703 |
ggctaagtgttaaattatatcaagggttgtcttataagttatataactcattggaggccgtcttctctttttcaattcagggcgtatgcggaagttctta |
802 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29175163 |
ggctaagtgttaaattatatcaagggttgtcttataagttatataactcattggaggccgtcttctctttttcaattcagggcgtatgcggaagttctta |
29175064 |
T |
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| Q |
803 |
cttggacttatgacaaaagtgtggctcaggctagcgtgagcgaagcctagcatatcgctcaccgtgcgccaatcattttacaactgttgacatgaacgg |
901 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29175063 |
cttggacttatgacaaaagcgtggctcaggctagcgtgagcg-agcctagcatatcgttcaccgtgcgccaatcattttacaactgttgacatgaacgg |
29174966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 5792267 - 5792309
Alignment:
| Q |
161 |
tgttaattgtggattgcaaaaaatagcagttcattcaaattcc |
203 |
Q |
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| T |
5792267 |
tgttaattgtggattgtagaaaatagcagttcgttcaaattcc |
5792309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 11049093 - 11049052
Alignment:
| Q |
283 |
ctagatagtgtatcgtggaacagcagtgatttgttcaaattc |
324 |
Q |
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| T |
11049093 |
ctagatagtgtatcgtggagcagtagcgatttgttcaaattc |
11049052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 323
Target Start/End: Original strand, 2990946 - 2991043
Alignment:
| Q |
227 |
cattcaaattccgctttgcaacagtgttgtagagcctctgtttgacaacattctct-ctagatagtgtatcgtggaacagcagtgatttgttcaaatt |
323 |
Q |
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||||||||||||||| |||||||||| | ||| ||| || |||||||||||| | | ||| |||| ||||||||||||| || ||||||||||||| |
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| T |
2990946 |
cattcaaattccgctatgcaacagtgatatagggccactatttgacaacattttgtactaaatagcgtatcgtggaacaaaagaaatttgttcaaatt |
2991043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 28727031 - 28726979
Alignment:
| Q |
165 |
aattgtggattgcaaaaaatagcagttcattcaaattccgctctgcaacagtg |
217 |
Q |
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|||||| |||||||||||||||| ||| ||||||||||||| |||||||||| |
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| T |
28727031 |
aattgtagattgcaaaaaatagcggtttgttcaaattccgctatgcaacagtg |
28726979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 3279231 - 3279285
Alignment:
| Q |
287 |
atagtgtatcgtggaacagcagtgatttgttcaaattctgctatggtatagccac |
341 |
Q |
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|||||||||| |||||||| || |||||||||||||| ||||||| | ||||||| |
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| T |
3279231 |
atagtgtatcatggaacagtagggatttgttcaaattttgctatgctgtagccac |
3279285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 34811630 - 34811594
Alignment:
| Q |
287 |
atagtgtatcgtggaacagcagtgatttgttcaaatt |
323 |
Q |
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| T |
34811630 |
atagtgtatcgtggaacagtagtgatttgttcaaatt |
34811594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 42035544 - 42035506
Alignment:
| Q |
292 |
gtatcgtggaacagcagtgatttgttcaaattctgctat |
330 |
Q |
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| T |
42035544 |
gtatcgtggaacagtagtgatttgttcaaattccgctat |
42035506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 30580440 - 30580481
Alignment:
| Q |
295 |
tcgtggaacagcagtgatttgttcaaattctgctatggtata |
336 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||| |
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| T |
30580440 |
tcgtggaacaatagtgatttgttcaaattctgctatgttata |
30580481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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