View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2792-Insertion-7 (Length: 821)
Name: NF2792-Insertion-7
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2792-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 48472252 - 48472578
Alignment:
| Q |
8 |
gatcttcctaaatttaattacattccaagtaatttgatacatcaaaatgctaatgtcaatatttcacttgctcgaattgcggatgaaggttgttgttctg |
107 |
Q |
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| T |
48472252 |
gatcttcctaaatttaattacattccaagtaatttgatacatcaaaatgctaatgtcaatatttcacttgctcgaattgcggatgaaggttgttgttctg |
48472351 |
T |
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| Q |
108 |
tagnnnnnnnngtttcgttatgactgttagatgaagttatttttggatcaatctcctatgnnnnnnnnnnnnnnnnngtatcacaacgttactgtctcaa |
207 |
Q |
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| T |
48472352 |
tagttttttttgtttcgttatgactgttagatgaagttatttttggatcaatctcctatgtttttttttttt-----gtatcacaacgttactgtctcaa |
48472446 |
T |
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| Q |
208 |
ctatcaattcactcactttgctgcaactgcaacatattgtttgataaatcctgcaaaacggttttttgtcacactgattgtgcacatattgttgctaaac |
307 |
Q |
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| T |
48472447 |
ctatcaattcactcactttgctgcaactgcaacatattgtttgataaatcctacaaaacggttttttgtcacactgattgtgcacatattgttgctaaac |
48472546 |
T |
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| Q |
308 |
ttattgtgcacgttgttatctgttattcttta |
339 |
Q |
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| T |
48472547 |
ttattgtgcacgttgttatctgttattcttta |
48472578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 690 - 821
Target Start/End: Original strand, 48475281 - 48475412
Alignment:
| Q |
690 |
cttttaagcttcaagctcttgcaaccttacctatattttccggtaattcaatgaaaaatcccatcttaaaattcttataaatgtacctatattttcttac |
789 |
Q |
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| T |
48475281 |
cttttaagcttcaagctcttgcaaccttacctatattttccggtaattcaatgaaaaatcccatcttaaaattcttataaatgtacctatattttcttac |
48475380 |
T |
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| Q |
790 |
caaaatcagtaaatttagcaacttttcaaaat |
821 |
Q |
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| T |
48475381 |
caaaatcagtaaatttagcaacttttcaaaat |
48475412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 435 - 549
Target Start/End: Original strand, 48475028 - 48475142
Alignment:
| Q |
435 |
atttgagttttagtatattaaaacctaaatttagacatgtcacacaaaaagaccaacttgacaatgaacaactaactttgactattgccacgcaagcaaa |
534 |
Q |
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| T |
48475028 |
atttgagttttagtatattaaaacctaaatttagacatgtcacacaaaaagaccaacttgacaatgaacaactaactttgactattgccacgcaagcaaa |
48475127 |
T |
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| Q |
535 |
ggtcgagactcacca |
549 |
Q |
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| T |
48475128 |
ggtcgagactcacca |
48475142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 338 - 437
Target Start/End: Original strand, 48472658 - 48472756
Alignment:
| Q |
338 |
tatgtggggaaattttaaccaacacagaataagatgaaaggaatgtaaatcgcagcgtcaatgacagacatacatctcatgtattgctttgatgcagatt |
437 |
Q |
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| T |
48472658 |
tatgtggggaaattttaaccaacacagaataagatgaaaggaatgtaaatcgcagcgtcaatgacagacatacatatcatgtattgc-ttgatgcagatt |
48472756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 35687461 - 35687416
Alignment:
| Q |
48 |
atcaaaatgctaatgtcaatatttcacttgctcgaattgcggatga |
93 |
Q |
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| T |
35687461 |
atcaaagtgcaaatgttaatatttcacttgctcggattgcggatga |
35687416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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