View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2792-Insertion-8 (Length: 722)
Name: NF2792-Insertion-8
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2792-Insertion-8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 9 - 722
Target Start/End: Original strand, 28519448 - 28520159
Alignment:
| Q |
9 |
gaaggaggaatacactcatgcaataagatggaatagtttgagcaactggcttgatgaaaacctctttacccacttgtgataaaactttactactccaaga |
108 |
Q |
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| T |
28519448 |
gaaggaggaatacactcatgcaataagataaaatagtttgagcaactggcttgatgaaaacctctttacccgcttgtgataaaactttactactccaaga |
28519547 |
T |
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| Q |
109 |
agagatacgcttccacaccatatcattgatataattaaaaactgatttcttgctactgcctaccatagaagggagtcctaaatatttttccgtcccaata |
208 |
Q |
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| T |
28519548 |
agagatacgcttccacaccatatcattgatataattaaaaatagatttcttgctactgcctttcatagaagggagtcctaaatattttcccgtcccaata |
28519647 |
T |
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| Q |
209 |
cactccgtcacttgaagaatattagggagggtagccttttaccgcagaggattcctactaaaaaatatctatgannnnnnncatattgatcaactgacat |
308 |
Q |
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| T |
28519648 |
cactccgtcatttgaagaatattagggagggtagccttt-accgtaggggattcctactaaaaaatatctatgatttttt-catattgatcaactgacat |
28519745 |
T |
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| Q |
309 |
gaggctttagcaaaagtatccagaatatctttcaaatctttgtttcagactcatttgctctaaacaaaagaaagctatgatttgcatataagagatgact |
408 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | ||||||||||||| |
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| T |
28519746 |
gaggctttagcaaaagtatccagaatacctttcaaatctttgtttcagactcatttgctctaaataaaagaaagctatcatttgaaaataagagatgact |
28519845 |
T |
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| Q |
409 |
aatagtgggcgctcttcggcaaacctgaactccatggagaattctattttgttcagcttgtttgatcagagcagtcataccttcatcacaaataataaac |
508 |
Q |
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| T |
28519846 |
aatagtgggcgctcttcggcaaacctgaactccatggagaattctatttcgttcagcttgtttgatcagagcagtcataccttcatcacaaataataaac |
28519945 |
T |
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| Q |
509 |
acatacggtgaaaagggtcaccttgacttatacctctccttggatgtataggacctactttgttatcattgatcagaacatggtaagttattgtagtaac |
608 |
Q |
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| T |
28519946 |
acatatggtgaaaagggtcaccttgacttatacctctccttggatgtattagacctactttgttatcattgatcagaacatggtaacttactgtagtaac |
28520045 |
T |
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| Q |
609 |
gcacatgtaatccacactgagttgaaacccatcctgtccaaaatgctaaacaaataattccaatcaacacgatcatatggtttgctaatatctattttta |
708 |
Q |
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| T |
28520046 |
acacatgtaatccacactgagttgaaacccatcctttccaaaattctaaaaaaataattccattcaacacgatcatatgatttgctaatatctattttta |
28520145 |
T |
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| Q |
709 |
atgttgcttcccct |
722 |
Q |
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| T |
28520146 |
atgttgcttcccct |
28520159 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 1503786 - 1503843
Alignment:
| Q |
21 |
cactcatgcaataagatggaatagtttgagcaactggcttgatgaaaacctctttacc |
78 |
Q |
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| T |
1503786 |
cactcatgcaataagaaggaataacttgggcaactgatttgattaaaacctctttacc |
1503843 |
T |
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