View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2792-Insertion-9 (Length: 667)
Name: NF2792-Insertion-9
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2792-Insertion-9 |
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| [»] scaffold0421 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 179 - 374
Target Start/End: Complemental strand, 42212318 - 42212121
Alignment:
| Q |
179 |
atagaataacaatattttatcaaaagtgtgtctcgttgtaattttatcaactgtgacgttattgaacttcaacaaaatcaaagttaccactgtcattcta |
278 |
Q |
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| T |
42212318 |
atagaataacaatattttatcaaaagtgtgtctcgtcgtaattttatcaactgtgacgttattgaacttcaacaagatcaaagttaccactgtcattcta |
42212219 |
T |
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| Q |
279 |
catcaacaattaaaacatatttaaagctgatccattatcgc--ttagattgctacatgcatttgtgaataatatattcaaatccaaagtgcagttatc |
374 |
Q |
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| T |
42212218 |
catcaacaattaaaacatatttaaagctgatccattatcactattagattgctacatgcatttgtgaataatatattcaaatccaaattgcagttatc |
42212121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 42212525 - 42212352
Alignment:
| Q |
8 |
cttttcataaatctataagaataatcatttcgaaagacattaaaatagttttcagttacatgttcggattcacataagttcaatagaatcaagatgacaa |
107 |
Q |
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| T |
42212525 |
cttttcataaatctataagaatgatcatttcgaaagacataaaaatagttttcggttacatgttcggattcacataagttcaatagaatcaagatgacaa |
42212426 |
T |
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| Q |
108 |
gtcatcgcgattttgtcaaaaacgacaatttagaacttcaacaaaaccacattcaaattcaactgcattaaata |
181 |
Q |
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| T |
42212425 |
gtcatcgcgattttgtcaaaaacgacaatttagaacttcaacaaaaccacattcaaattcaactgcattaaata |
42212352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 473 - 572
Target Start/End: Complemental strand, 42212019 - 42211920
Alignment:
| Q |
473 |
ccacacgtgacagttgcaaaaagtgtgagaagaagggtttagatttgagagaaaatgaaaaccgtagaaaaggacagagaaagtgcacgtcacaaaaagt |
572 |
Q |
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| T |
42212019 |
ccacacgtgacagttgcaaaaagtgtgagaagaagggtttagatttgagagaaaatgaaaaccgtagaaaaggacagagaaagtgcacgtcacaaaaagt |
42211920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 575 - 667
Target Start/End: Original strand, 13270 - 13362
Alignment:
| Q |
575 |
aaaaagattcatgtaccactcttttggtacacccttttctaccaccaatgacatggcatggaaatattaaaaaatttaactttgtaaataatg |
667 |
Q |
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| T |
13270 |
aaaaagattcatgtaccactcttttggtacacccttttctaccaccgatgacatggcatggaaatattaaaaaatttaactatgtaaagaatg |
13362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 582 - 667
Target Start/End: Complemental strand, 47345551 - 47345466
Alignment:
| Q |
582 |
ttcatgtaccactcttttggtacacccttttctaccaccaatgacatggcatggaaatattaaaaaatttaactttgtaaataatg |
667 |
Q |
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| T |
47345551 |
ttcatgtattactcttttggtacacccttttatagcactgatgacatgacatggaaatattaaacaatttaactttgtaaagaatg |
47345466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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