View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2792_high_1 (Length: 367)
Name: NF2792_high_1
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2792_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 3238169 - 3238505
Alignment:
| Q |
17 |
tatcaaacatagaataataatcataatataacatatttgatgttgtctatcaatccccgatcgcggaaaatagcagctcattcaaatttcgatttgcaac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238169 |
tatcaaacatagaataataatcataatataacatatttgatgttgtctatcaatccccgatcgcggaaaatagcagctcattcaaatttcgatttgcaac |
3238268 |
T |
|
| Q |
117 |
aggtctatagtgtcgctattgccgctgtattttgtactaattaacatattgcagaacaatagcgattagttcaaattcgctatctatagtaccgctgcag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238269 |
aggtctatagtgtcgctattgccgctgtattttgtactaattaacatattgcagaacaatagcgattagttcaaattcgctatctatagtaccgctgcag |
3238368 |
T |
|
| Q |
217 |
ccgctatttaataaattcttccacctaaaatgattatctctagtcgccaatcttcaaagttataaaaagaattatagacacaaatgctcgatcaacctgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238369 |
ccgctatttaataaattcttccacctaaaatgattatctctagtcgccaatcttcaaagttataaaaagaattatagacacaaatgctcgatcaacctgt |
3238468 |
T |
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| Q |
317 |
actttaggtaatgcacaggttggtgagtgtcacaggt |
353 |
Q |
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| T |
3238469 |
actttaggtaatgcacaggttggtgagtgtcacaggt |
3238505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 48198079 - 48198123
Alignment:
| Q |
147 |
tttgtactaattaacatattgcagaacaatagcgattagttcaaa |
191 |
Q |
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| T |
48198079 |
tttgtactaaataacatatcacagaacaatagcgattagttcaaa |
48198123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 16169188 - 16169232
Alignment:
| Q |
148 |
ttgtactaattaacatattgcagaacaatagcgattagttcaaat |
192 |
Q |
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| T |
16169188 |
ttgtactcaatagcatatcgcagaacaatagcgattagttcaaat |
16169232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 20981319 - 20981269
Alignment:
| Q |
144 |
tattttgtactaattaacatattgcagaacaatagcgattagttcaaattc |
194 |
Q |
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|||||| |||||| || | |||||||||||||||| ||||||||||||||| |
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| T |
20981319 |
tattttatactaaatagcgtattgcagaacaatagtgattagttcaaattc |
20981269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 39647140 - 39647189
Alignment:
| Q |
145 |
attttgtactaattaacatattgcagaacaatagcgattagttcaaattc |
194 |
Q |
| |
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|||||||||||| || ||||| ||||||||||| ||||| |||||||||| |
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| T |
39647140 |
attttgtactaaatagcatatcgcagaacaataacgatttgttcaaattc |
39647189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 55314542 - 55314496
Alignment:
| Q |
147 |
tttgtactaattaacatattgcagaacaatagcgattagttcaaatt |
193 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| ||| ||||||||| |
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| T |
55314542 |
tttgtactaattagcatatcgcagaacaatagcaatttgttcaaatt |
55314496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 2732984 - 2732936
Alignment:
| Q |
145 |
attttgtactaattaacatattgcagaacaatagcgattagttcaaatt |
193 |
Q |
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|||||||||||| || ||||| ||| ||||||||||||| ||||||||| |
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| T |
2732984 |
attttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt |
2732936 |
T |
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