View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2792_low_2 (Length: 331)
Name: NF2792_low_2
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2792_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 14783242 - 14782942
Alignment:
| Q |
10 |
catcatcaatctctcaccatgaaccctaccaacaaagaagacacaattgacattgaagccattgatcatcaagaagaagaaacacaacaacatcaaaatc |
109 |
Q |
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| T |
14783242 |
catcatcaatctctcaccacgaaccctaccaacaatgaagacacaattgacattgaagccattgatcatcaagaagaa---acacaacaacatcaaaatc |
14783146 |
T |
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| Q |
110 |
aaccatcaccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactttct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14783145 |
aaccatcaccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactatct |
14783046 |
T |
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| Q |
210 |
cttactctttgttggttcaacctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatgtgct |
309 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14783045 |
cttactctttgttggttcaatctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatgtgct |
14782946 |
T |
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| Q |
310 |
ggct |
313 |
Q |
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|||| |
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| T |
14782945 |
ggct |
14782942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 154 - 304
Target Start/End: Complemental strand, 14775227 - 14775077
Alignment:
| Q |
154 |
gatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactttctcttactctttgttggttcaacctcatcaagtttactctcaaaat |
253 |
Q |
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|||||||| |||| || |||||||||||||| || |||||| | || |||| || || |||||||| || ||| || ||||||||||||||||| | |
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| T |
14775227 |
gatcaaaagtccaccactaacaaaaggtacataccccttttggttattaactaccttttgctctttgtagggtcactttcttcaagtttactctcaaagt |
14775128 |
T |
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| Q |
254 |
actatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaat |
304 |
Q |
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||||||| ||||| |||||||| || | |||||| |||||||||||||||| |
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| T |
14775127 |
actattttatccataaaggttctagtagatgggtttcaacttgggttcaat |
14775077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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