View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2792_low_3 (Length: 265)
Name: NF2792_low_3
Description: NF2792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2792_low_3 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 45746767 - 45747019
Alignment:
| Q |
1 |
ggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggatgaggacactcc |
100 |
Q |
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| T |
45746767 |
ggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggatgaggacactcc |
45746866 |
T |
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| Q |
101 |
ttgaagaaactnnnnnnnnnnnnnnnccaataaaagaacaaaacacatcaaccacatagaaccaaattagtttaataacagagaaataaaatggcaagaa |
200 |
Q |
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| T |
45746867 |
ttgaagaaact---aaaaaaaaaaaaccaataaaagaacaaaacacatcaaccacatagaaccacattagtttaataaaaaagaaataaaatggcaagaa |
45746963 |
T |
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| Q |
201 |
attg-nnnnnnnncatacgattcaagctcttgaatttgattaggagtgtgtctgtg |
255 |
Q |
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| T |
45746964 |
attgaaaaaaaaacatacgattcaagctcttgaatttgattaggagtgtgtctgtg |
45747019 |
T |
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Target: scaffold0198 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 9972 - 10081
Alignment:
| Q |
2 |
gttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggatgaggacactcct |
101 |
Q |
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| T |
9972 |
gttcgccgattctgaaaccagaacttgacttgtttgtttgccaagccaagcttcttgctaaggtcagttctttgcttctcatcaggatgtggacactcct |
10071 |
T |
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| Q |
102 |
tgaagaaact |
111 |
Q |
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| T |
10072 |
tgaagaaact |
10081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 28597652 - 28597614
Alignment:
| Q |
67 |
caacctttgtttttcatcaggatgaggacactccttgaa |
105 |
Q |
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| T |
28597652 |
caacctttgtttctcatcaggatgaggacactccttgaa |
28597614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 28599347 - 28599429
Alignment:
| Q |
17 |
aaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggatgaggacactc |
99 |
Q |
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| T |
28599347 |
aaccaaaacttgacttgtcttgtttccaaacaaagccttttgctaagttcaagtctttgtttttcatcaggatgaggacactc |
28599429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 12327106 - 12327178
Alignment:
| Q |
39 |
tttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggatgaggacactccttgaagaaact |
111 |
Q |
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| T |
12327106 |
tttccaaacaaagccttttgctaagttccaatctttgtttctcatctgggtgaggacactccttaaacaaact |
12327178 |
T |
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