View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2793_high_1 (Length: 500)
Name: NF2793_high_1
Description: NF2793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2793_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 488
Target Start/End: Original strand, 37626753 - 37627221
Alignment:
| Q |
19 |
cgacctttatccacaatggtcaccaatgtgctgaatgtagaaatgcaagaaatttgtgactgcaccaaatttgaatccgtattgaatactatatcacact |
118 |
Q |
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| T |
37626753 |
cgacctttatcca--atggtcaccaatgtgctgaatgtagaaatgcaagaaatttgtgactgcaccaaatttgaatccgtattgaatactatatcacact |
37626850 |
T |
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| Q |
119 |
accaaaaagttgaattagaaaaagattcttaaataagaatcaattgatttttaattttgctttttcctagtagtgctaacnnnnnnnn-caaattcaaat |
217 |
Q |
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| T |
37626851 |
accaaaaagttgaattagaaaaagattcttaaataagaaacaattgatttttaattttgctttttcctagtagttctaccttgttttttcaaattcaaat |
37626950 |
T |
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| Q |
218 |
gatgtatgccaagaatgcaacaatttccctgagaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattg |
317 |
Q |
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| T |
37626951 |
gatgtatgccaagaatgcaacaatttcccttagaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattg |
37627050 |
T |
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| Q |
318 |
aaagactaagttttgcaagagataggccaacagagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttac |
417 |
Q |
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| T |
37627051 |
aaagactaagttttgcaagagatagaccaacagagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttac |
37627150 |
T |
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| Q |
418 |
aaaaaccatttgcattttggatgttattgatgacatctttgacaattatggtacattagaggatcttgttc |
488 |
Q |
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| T |
37627151 |
aaaaaccatttgcattttggatgttattgatgacatctttgacaattatggtacattagaggatcttgttc |
37627221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 249 - 488
Target Start/End: Original strand, 37618569 - 37618807
Alignment:
| Q |
249 |
agaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagataggccaac |
348 |
Q |
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| T |
37618569 |
agaaatgctacatttcataactagtttatttgattt-gtttaggtggtggaaagagttgggacttgttgaaaaacttggttttgcaagagatagaccaac |
37618667 |
T |
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| Q |
349 |
agagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttggatgttattgat |
448 |
Q |
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| T |
37618668 |
agagtgcttcttatggacagtagggatatttccagaaccatgtcattcaaattgccgcatagaacttacaaaaaccatatgtattttgctagtaatggat |
37618767 |
T |
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| Q |
449 |
gacatctttgacaattatggtacattagaggatcttgttc |
488 |
Q |
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| T |
37618768 |
gatatctttgacacttatggaacattagatgaacttgttc |
37618807 |
T |
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