View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2793_high_14 (Length: 301)

Name: NF2793_high_14
Description: NF2793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2793_high_14
NF2793_high_14
[»] chr3 (1 HSPs)
chr3 (6-301)||(45378369-45378661)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 6 - 301
Target Start/End: Original strand, 45378369 - 45378661
Alignment:
Q  6 agaagcagagacgatttgatttaagatgaagataactgagaaaacggttaaacgagtaaagtttgttgaggttcaaactacctaggtatttggcgtatgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  45378369 agaagcagagacgatttgatttaagatgaagataactgagaaaacggttaaacgagtaaagtttgttcaggttcaaactacataggtatttggcgtatgc 45378468  T
Q  106 aagtggaattctttctaaacaataggaatggtccctctctcatatacaattaataataaataatgtttgtgatgaaatgaatcgagggacacgtggaaag 205  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||    
T  45378469 aagtgcaattctttctaaacaataggaatggtccctctctcatatacaat---taataaataatgtttctgatgaaatgaatcgagggacacgtggaaag 45378565  T
Q  206 agaagagttggtattggattctgccttggacgtgtcatatttagtttagcaccgtccagataataaataatatgtcatcttatttagtttgtttca 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45378566 agaagagttggtattggattctgccttggacgtgtcatatttagtttagcaccgtccagatgataaataatatgtcatcttatttagtttgtttca 45378661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University