View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2793_high_1_N (Length: 475)
Name: NF2793_high_1_N
Description: NF2793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2793_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 157 - 374
Target Start/End: Original strand, 4065061 - 4065278
Alignment:
| Q |
157 |
tcatttaccttgaccatgttgttgaccctcagattctgaagtaccagaagaagaaccaattgaaccaccaccaccttgtggtgaaggaggaacaacttga |
256 |
Q |
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| T |
4065061 |
tcatttaccttgaccatgttgttgaccctcagattctgaagtacccgaagaagaaccaattgaaccaccaccaccttgtggtgaaggaggaacaacttga |
4065160 |
T |
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| Q |
257 |
tccaattccttttcaccattcaaaccaagtccaccaacacgagtagttaaagaactagttcttatcaaactttcaccaccaacaccttgcacaaaaacct |
356 |
Q |
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| T |
4065161 |
tccaattccttttcaccattcaaaccaagtccaccaacacgagtagttaaagaactagttcttatcaaactttcaccaccaacaccttgcacaaaaacct |
4065260 |
T |
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| Q |
357 |
ccactagattattactat |
374 |
Q |
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| T |
4065261 |
ccactagattattactat |
4065278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 4064904 - 4064998
Alignment:
| Q |
1 |
acaacaacaacaaaaattaaagtaaattatccacgattcttcaaggataacctagacctgacccgacttc-aaaaaacactaatttatcaacaac |
94 |
Q |
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| T |
4064904 |
acaacaacaacaaaaattaaagtaaattatccacgattcttcaaaaataacctagacctgactcgacttcaaaaaaacactaatttatcaacaac |
4064998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 4064835 - 4064908
Alignment:
| Q |
21 |
agtaaattatccacgattcttcaaggataacctagacctgacccgacttcaaaaaacactaatttatcaacaac |
94 |
Q |
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| T |
4064835 |
agtaaattatccacgattcttcaaggataacctcgacctgacccaacttaaagaaacactaattcatcaacaac |
4064908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 4065329 - 4065369
Alignment:
| Q |
431 |
aaacttctttctctcatagccctagaatttctctgcttctc |
471 |
Q |
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| T |
4065329 |
aaacttctttctctcatagccctagaatttctctgcttctc |
4065369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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