View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2793_high_4 (Length: 380)

Name: NF2793_high_4
Description: NF2793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2793_high_4
NF2793_high_4
[»] chr2 (8 HSPs)
chr2 (8-186)||(25558449-25558627)
chr2 (189-278)||(25558086-25558173)
chr2 (276-380)||(25557831-25557936)
chr2 (276-355)||(4865477-4865555)
chr2 (298-376)||(37828446-37828523)
chr2 (319-376)||(4865682-4865739)
chr2 (319-376)||(29667569-29667626)
chr2 (276-347)||(34887855-34887924)
[»] chr7 (8 HSPs)
chr7 (276-376)||(1505543-1505643)
chr7 (288-376)||(23457411-23457499)
chr7 (288-376)||(23533269-23533357)
chr7 (276-376)||(23474929-23475029)
chr7 (310-376)||(23443335-23443401)
chr7 (319-375)||(2169266-2169322)
chr7 (308-376)||(23534133-23534201)
chr7 (328-377)||(25921030-25921081)
[»] chr5 (5 HSPs)
chr5 (276-376)||(17476169-17476268)
chr5 (298-365)||(7148294-7148360)
chr5 (298-376)||(38299728-38299804)
chr5 (301-376)||(38299874-38299953)
chr5 (330-378)||(41048646-41048694)
[»] chr1 (3 HSPs)
chr1 (288-378)||(27630998-27631088)
chr1 (320-378)||(51249165-51249223)
chr1 (288-376)||(42175252-42175340)
[»] chr3 (4 HSPs)
chr3 (276-377)||(30259605-30259706)
chr3 (319-373)||(30259865-30259919)
chr3 (319-367)||(38421258-38421306)
chr3 (290-346)||(52236576-52236632)
[»] chr6 (4 HSPs)
chr6 (279-375)||(34448430-34448526)
chr6 (276-376)||(1706803-1706903)
chr6 (321-378)||(5449483-5449541)
chr6 (320-377)||(4974690-4974747)
[»] chr4 (4 HSPs)
chr4 (276-355)||(53801506-53801585)
chr4 (276-376)||(12828554-12828655)
chr4 (315-376)||(52074897-52074958)
chr4 (288-355)||(26310235-26310300)
[»] chr8 (4 HSPs)
chr8 (319-376)||(13706217-13706274)
chr8 (289-376)||(1410698-1410783)
chr8 (336-376)||(1410470-1410510)
chr8 (297-376)||(29795754-29795833)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 25558627 - 25558449
Alignment:
Q  8 gaagcagagaccatggattgaataaagaagaaggagaaatatgtttgtcttgtgaaaagaagaatacgacgctgcacctgtgttgtgaaatagggattta 107  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  25558627 gaagcaaagaccatggatttaataaagaagaaggagaaatatgtttgtcttgtgaaaagaagaatacggcgatgcacctgtgttgtgaaatagggattta 25558528  T
Q  108 agagttgtgttttgtttttaacaggttgtgtaatgggcttattgggcttagtttaaaacttttactatcagccttacat 186  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  25558527 ggagttgtgttttgtttttaacaggttgtgtaatgggcttattaggcttagtttaaaacttttactaccagccttacat 25558449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 25558173 - 25558086
Alignment:
Q  189 taattgctaaaatggatataattttgctcttttttcttaattaaaattacctatttgtgttttaggggatttaattacctatttgttgtt 278  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  25558173 taattgctaaaatggatctaattttgctcttttttcttaattaa--ttacctatttgtgttttaggggatttaattacctatttgttgtt 25558086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 276 - 380
Target Start/End: Complemental strand, 25557936 - 25557831
Alignment:
Q  276 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattt 374  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| |||| |||||| ||||||    
T  25557936 gttatacttcatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttgtatgggagtgagcgtttttttgttggaagaagagcaattt 25557837  T
Q  375 tcaata 380  Q
    | ||||    
T  25557836 ttaata 25557831  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 355
Target Start/End: Complemental strand, 4865555 - 4865477
Alignment:
Q  276 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 355  Q
    ||||||||| | |||||| || |||||||||| ||||||||| |||||||||| ||||| |||| |||||||||||||||    
T  4865555 gttatacttcagcttaccaaacgtgagttaactcacgtgggg-gtattttggtaagtttgtatgagagtgaacgtttttt 4865477  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 37828523 - 37828446
Alignment:
Q  298 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    |||||||||| |||| | || |||||||||||||||| |||| |||||| |||||||| ||||||||||| ||||||||    
T  37828523 gtgagttaactcacgcgagg-gtattttggtcagtttgtatgtgagtgatcgttttttgttgggagaagagcaattttc 37828446  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 4865682 - 4865739
Alignment:
Q  319 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||| ||| ||||||||    
T  4865682 gtattttggtcagtttgtatgggagtgaacattttttgttgggaggagagcaattttc 4865739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 29667626 - 29667569
Alignment:
Q  319 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    ||||||| || ||||| |||||||||||||| ||||||||||| ||||| || |||||    
T  29667626 gtatttttgttagtttgtatgggagtgaacgatttttattgggtgaagagcagttttc 29667569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 34887924 - 34887855
Alignment:
Q  276 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaa 347  Q
    ||||||||| | |||| |||| |||| ||||| |||||||||  ||||||||| ||||| ||||||||||||    
T  34887924 gttatacttcagcttatcgaacgtgaattaactcacgtgggg--tattttggttagtttgtatgggagtgaa 34887855  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 1505643 - 1505543
Alignment:
Q  276 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 375  Q
    ||||||||| | |||| ||||||||||||||| ||| ||| | ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||||    
T  1505643 gttatacttcagcttatcgaatgtgagttaactcacatggagggtattttggtcggtttatatgggagtaaacgttttttgttgggagaagagcaatttt 1505544  T
Q  376 c 376  Q
    |    
T  1505543 c 1505543  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 23457411 - 23457499
Alignment:
Q  288 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    |||||| ||||||||||||| |||||||   |||||||||| ||||| ||||||||||| |||||||| || |||||||||||||||||    
T  23457411 cttaccaaatgtgagttaactcacgtggaaggtattttggtaagtttttatgggagtgagcgttttttgtttggagaagaacaattttc 23457499  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 288 - 376
Target Start/End: Complemental strand, 23533357 - 23533269
Alignment:
Q  288 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    |||||| || |||||||||| ||||||| | |||||||||| ||||| ||||||||||| | |||||| ||||||||||||||||||||    
T  23533357 cttaccaaacgtgagttaactcacgtggtgggtattttggtaagtttttatgggagtgagcattttttgttgggagaagaacaattttc 23533269  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 23475029 - 23474929
Alignment:
Q  276 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 375  Q
    ||||||||| | |||||| || |||||||||| ||| ||| | |||||||||| | ||| |||||||| || |||||||| |||||||||||||||||||    
T  23475029 gttatacttcaacttaccaaacgtgagttaactcacatggagggtattttggtaaatttttatgggagagagcgttttttgttgggagaagaacaatttt 23474930  T
Q  376 c 376  Q
    |    
T  23474929 c 23474929  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 23443401 - 23443335
Alignment:
Q  310 acgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    |||||| | |||||||| | ||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  23443401 acgtggagggtattttgataagtttttatgggagtgagcgttttttgttgggagaagaacaattttc 23443335  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 2169266 - 2169322
Alignment:
Q  319 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 375  Q
    |||||||| || |||| ||||||||||| |||||||| ||||||||||| |||||||    
T  2169266 gtattttgatcggtttgtatgggagtgagcgttttttgttgggagaagagcaatttt 2169322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 376
Target Start/End: Original strand, 23534133 - 23534201
Alignment:
Q  308 acacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    |||||||| | ||||||| || ||||| |||| |||||| | |||||| ||||||||||| ||||||||    
T  23534133 acacgtggcgggtatttttgttagtttgtatgagagtgagcattttttgttgggagaagagcaattttc 23534201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 25921081 - 25921030
Alignment:
Q  328 tcagtttatatgggagtgaacgtt--ttttattgggagaagaacaattttca 377  Q
    ||||||| ||||||||||||||||  |||| ||||| |||||||||||||||    
T  25921081 tcagtttgtatgggagtgaacgttttttttgttgggtgaagaacaattttca 25921030  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 276 - 376
Target Start/End: Original strand, 17476169 - 17476268
Alignment:
Q  276 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 375  Q
    ||||||||||| ||||||||| | |||||||| ||||||| | |||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  17476169 gttatactttagcttaccgaacgcgagttaactcacgtggag-gtattttggtcagtttgtatgagagcgaacgttttttgttgggagaagaacaatttt 17476267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 7148360 - 7148294
Alignment:
Q  298 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaa 365  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||||| | |||||| |||||||||    
T  7148360 gtgagttaactcacgtagggagtattttggtcagtttgtatgggagtgagc-ttttttgttgggagaa 7148294  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 38299804 - 38299728
Alignment:
Q  298 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    |||||||||| |||| ||| |||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||||||||    
T  38299804 gtgagttaactcacgcggg-agtattttagtcagtttgtatgggagtgaacgtctttt-ttgggagaagagcaattttc 38299728  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 38299874 - 38299953
Alignment:
Q  301 agttaacacacgtggggagtattttggtcagttta-----tatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    ||||||| ||||||||  |||||||||||||||||     |||| |||||| |||||||| ||||||||||| ||||||||    
T  38299874 agttaactcacgtgggc-gtattttggtcagtttaatttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 38299953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 378
Target Start/End: Complemental strand, 41048694 - 41048646
Alignment:
Q  330 agtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 378  Q
    ||||| ||||||||||  |||||||| ||||||||||| ||||||||||    
T  41048694 agtttgtatgggagtgtgcgttttttgttgggagaagagcaattttcaa 41048646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 27631088 - 27630998
Alignment:
Q  288 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 378  Q
    ||||||||| |||||||||| ||||||||  || |||| |||||||||||||||||||| |||||||| ||||||||||| | ||||||||    
T  27631088 cttaccgaacgtgagttaactcacgtgggatgtgttttagtcagtttatatgggagtgagcgttttttgttgggagaagagctattttcaa 27630998  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 51249223 - 51249165
Alignment:
Q  320 tattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 378  Q
    |||||| ||||||||||||| ||||| |||| |||| ||||||||||| ||||||||||    
T  51249223 tattttagtcagtttatatgagagtgcacgtcttttgttgggagaagagcaattttcaa 51249165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 42175252 - 42175340
Alignment:
Q  288 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    ||||||||  |||||||||| ||||||| |  ||||| | || |||| |||||||||||  ||||||| ||||||||||| ||||||||    
T  42175252 cttaccgagcgtgagttaactcacgtggaggatatttcgatcggtttgtatgggagtgagtgttttttgttgggagaagagcaattttc 42175340  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 377
Target Start/End: Complemental strand, 30259706 - 30259605
Alignment:
Q  276 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 375  Q
    ||||||||| |||| |||||| |||||||||| ||||||  |||||||||||||||||| ||||  ||||| |||||||| ||||| ||||  |||||||    
T  30259706 gttatacttcatctgaccgaacgtgagttaactcacgtgacgagtattttggtcagtttgtatgaaagtgatcgttttttgttgggtgaagcgcaatttt 30259607  T
Q  376 ca 377  Q
    ||    
T  30259606 ca 30259605  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 30259865 - 30259919
Alignment:
Q  319 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatt 373  Q
    |||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||||    
T  30259865 gtattttgatcagtttgtatgggagtgagcgttttttgttgggagaagagcaatt 30259919  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 38421306 - 38421258
Alignment:
Q  319 gtattttggtcagtttatatgggagtgaacgttttttattgggagaaga 367  Q
    |||||||| ||||||||||||||||| | |||||||| | |||||||||    
T  38421306 gtattttgatcagtttatatgggagtaagcgttttttgtcgggagaaga 38421258  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 52236576 - 52236632
Alignment:
Q  290 taccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtga 346  Q
    |||||||||||||||||| ||  | | ||||||||||||||||| || |||||||||    
T  52236576 taccgaatgtgagttaactcaaattgagagtattttggtcagttcatgtgggagtga 52236632  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 34448430 - 34448526
Alignment:
Q  279 atactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 375  Q
    |||||| | |||||| || ||||| |||||||||||||| |||||||||||||||| |||||| ||||  ||||||| || |||||||| |||||||    
T  34448430 atacttcagcttaccaaacgtgagctaacacacgtggggggtattttggtcagtttgtatgggcgtgagtgttttttgtttggagaagagcaatttt 34448526  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 376
Target Start/End: Original strand, 1706803 - 1706903
Alignment:
Q  276 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 375  Q
    ||||||||| | |||||||||  ||||||||| ||||||| | ||| |||| |||||||||||| |||||||  |||||| ||||||||||| || ||||    
T  1706803 gttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagtgaatcttttttgttgggagaagagcagtttt 1706902  T
Q  376 c 376  Q
    |    
T  1706903 c 1706903  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 5449541 - 5449483
Alignment:
Q  321 attttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattttcaa 378  Q
    |||||||||||||| |||||||||||||| |||||| || |||||||| ||||||||||    
T  5449541 attttggtcagtttgtatgggagtgaacgcttttttgtttggagaagagcaattttcaa 5449483  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 4974747 - 4974690
Alignment:
Q  320 tattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttca 377  Q
    ||||||||||||||| ||||| ||||| |||||||| ||  ||||||| |||||||||    
T  4974747 tattttggtcagtttgtatggaagtgagcgttttttgttaagagaagagcaattttca 4974690  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 53801506 - 53801585
Alignment:
Q  276 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 355  Q
    ||||||||| | |||| |||| |||||||||| ||||||| |||||||||||||||||| | || |||||||||||||||    
T  53801506 gttatacttcagcttatcgaacgtgagttaactcacgtggagagtattttggtcagtttgtttgagagtgaacgtttttt 53801585  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 276 - 376
Target Start/End: Original strand, 12828554 - 12828655
Alignment:
Q  276 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt-attgggagaagaacaattt 374  Q
    ||||||||| ||||||||||| |||||||||| |||||| |   ||||||||||||||| |||| |||||||| ||||||  |||||||||||  |||||    
T  12828554 gttatacttcatcttaccgaacgtgagttaactcacgtgagagatattttggtcagtttgtatgagagtgaacattttttggttgggagaagagaaattt 12828653  T
Q  375 tc 376  Q
    ||    
T  12828654 tc 12828655  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 376
Target Start/End: Original strand, 52074897 - 52074958
Alignment:
Q  315 gggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    ||||||||||||||| || ||||||| ||||| ||||||||| || ||||||| ||||||||    
T  52074897 gggagtattttggtcggtctatatggaagtgagcgttttttactgagagaagagcaattttc 52074958  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 26310300 - 26310235
Alignment:
Q  288 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 355  Q
    ||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||||| | ||||||    
T  26310300 cttactgaatgtgagttaattca--tgcggagtattttggtcagtttgtatgggagtgagcatttttt 26310235  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 13706217 - 13706274
Alignment:
Q  319 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    |||||||||| ||||| ||||||||||||||||||||| ||| |||||| ||||||||    
T  13706217 gtattttggttagtttgtatgggagtgaacgttttttaatggtagaagagcaattttc 13706274  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 376
Target Start/End: Original strand, 1410698 - 1410783
Alignment:
Q  289 ttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    ||||||||  ||||||||| ||||||| | |||||||| | ||||||||||| |||||  ||||||| ||||||||||| ||||||||    
T  1410698 ttaccgaacatgagttaactcacgtggag-gtattttgattagtttatatggcagtgagtgtttttt-ttgggagaagagcaattttc 1410783  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 1410510 - 1410470
Alignment:
Q  336 tatgggagtgaacgttttttattgggagaagaacaattttc 376  Q
    ||||| |||||||||||||| |||| |||||||||||||||    
T  1410510 tatggaagtgaacgttttttgttggaagaagaacaattttc 1410470  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 29795833 - 29795754
Alignment:
Q  297 tgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattttc 376  Q
    ||||||||||| |||| || | |||||||||||||||| |||| |||| |||| |||||| ||| ||||||| ||||||||    
T  29795833 tgtgagttaactcacgcggag-gtattttggtcagtttgtatgagagtaaacgtttttttgttgagagaagagcaattttc 29795754  T

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