View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2793_high_6 (Length: 353)
Name: NF2793_high_6
Description: NF2793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2793_high_6 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 206 - 353
Target Start/End: Complemental strand, 34579015 - 34578868
Alignment:
| Q |
206 |
aggaagtagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaact |
305 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
34579015 |
aggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggtgaaggatattcaact |
34578916 |
T |
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| Q |
306 |
tgctcatcgtatccgtggtgaacgtgcttagggttattgactagttac |
353 |
Q |
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| T |
34578915 |
tgctcgtcgtatccgtggtgaacgagcttagggttatagactagttac |
34578868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 206 - 353
Target Start/End: Complemental strand, 34584764 - 34584617
Alignment:
| Q |
206 |
aggaagtagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaact |
305 |
Q |
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| T |
34584764 |
aggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggtgaaggatattcaact |
34584665 |
T |
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| Q |
306 |
tgctcatcgtatccgtggtgaacgtgcttagggttattgactagttac |
353 |
Q |
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| T |
34584664 |
tgctcgtcgtatccgtggtgaacgagcttagggttatagactagttac |
34584617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 206 - 352
Target Start/End: Complemental strand, 34571547 - 34571401
Alignment:
| Q |
206 |
aggaagtagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaact |
305 |
Q |
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| T |
34571547 |
aggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaact |
34571448 |
T |
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| Q |
306 |
tgctcatcgtatccgtggtgaacgtgcttagggttattgactagtta |
352 |
Q |
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| T |
34571447 |
tgctcgccgtatccgtggtgaacgtgcttagggctatggattagtta |
34571401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 206 - 352
Target Start/End: Complemental strand, 34562753 - 34562604
Alignment:
| Q |
206 |
aggaagtagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaact |
305 |
Q |
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| T |
34562753 |
aggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaact |
34562654 |
T |
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| Q |
306 |
tgctcatcgtatccgtggtgaa---cgtgcttagggttattgactagtta |
352 |
Q |
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| T |
34562653 |
tgcttgccgtatccgtggtgaacgtcgtggttagggttattgactagtta |
34562604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 13576386 - 13576477
Alignment:
| Q |
217 |
gaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaacttgc |
308 |
Q |
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| T |
13576386 |
gaagcttatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgc |
13576477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 338
Target Start/End: Original strand, 41943982 - 41944103
Alignment:
| Q |
217 |
gaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaacttgctcatcgta |
316 |
Q |
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| T |
41943982 |
gaagcttatctggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgcacgccgta |
41944081 |
T |
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| Q |
317 |
tccgtggtgaacgtgcttaggg |
338 |
Q |
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| T |
41944082 |
ttcgtggtgaacgtgcttaggg |
41944103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 342
Target Start/End: Original strand, 25865756 - 25865863
Alignment:
| Q |
235 |
ttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaacttgctcatcgtatccgtggtgaacgtgctt |
334 |
Q |
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| T |
25865756 |
ttgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattcagcttgctcgtcgtattcgtggtgaacgtgctt |
25865855 |
T |
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| Q |
335 |
agggttat |
342 |
Q |
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|||||||| |
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| T |
25865856 |
agggttat |
25865863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 342
Target Start/End: Original strand, 44344011 - 44344110
Alignment:
| Q |
235 |
ttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaacttgctcatcgtatccgtggtgaacgtgctt |
334 |
Q |
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| T |
44344011 |
ttgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattcagct--------gtatccgtggtgaacgtgctt |
44344102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 227 - 337
Target Start/End: Complemental strand, 7594211 - 7594101
Alignment:
| Q |
227 |
tggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaacttgctcatcgtatccgtggtga |
326 |
Q |
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| T |
7594211 |
tggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattcagcttgctcgtcgcattcgtggtga |
7594112 |
T |
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| Q |
327 |
acgtgcttagg |
337 |
Q |
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| T |
7594111 |
acgtgcttagg |
7594101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 12547089 - 12546996
Alignment:
| Q |
217 |
gaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaagcatattcaacttgctc |
310 |
Q |
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| T |
12547089 |
gaagcttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctc |
12546996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 12531530 - 12531589
Alignment:
| Q |
217 |
gaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagg |
276 |
Q |
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| T |
12531530 |
gaagcttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagg |
12531589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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