View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2793_high_7 (Length: 342)
Name: NF2793_high_7
Description: NF2793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2793_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 4 - 334
Target Start/End: Original strand, 34928339 - 34928669
Alignment:
| Q |
4 |
agagttgctctgctaaaaaccagttaaaacctgaaggaactggtcatgagctggtaaatacggacaattcacctgtttggaacggtttgatgttgagaca |
103 |
Q |
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| T |
34928339 |
agagttgctctgctaaaaaccagttaaaacctgaaggaactggtcatgagctggtaaatacggacaattcacctgtttggaatggtttgatgttgagaca |
34928438 |
T |
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| Q |
104 |
tttttgaaaaacaaaaggaaataatattttagataaagggggagcaaatgaggaggaagaatgaggtagcagagataatacgaaggatgatttggcttcc |
203 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34928439 |
ttttcgaaaaacaaaaggaaataatattttagataaagggggagcaaatgaggaggaagaatgaggtagcagagataatacaaaggatgatttggcttcc |
34928538 |
T |
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| Q |
204 |
attgttgcctctcttggctgagattgagaccctttcccttctctatctccaaaacttgaccttcttttaaccaattaaccttgagagtgttatcaaaacc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34928539 |
attgttgcctctcttggctgagattgagaccctttcccttctctatctccaaaacttgaccttcttttaaccaattaaccttgagagtgttatcaaaacc |
34928638 |
T |
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| Q |
304 |
ctccttggtggattttctactgttctctgct |
334 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
34928639 |
ctccttggtggattttctactgttctttgct |
34928669 |
T |
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