View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2793_high_9 (Length: 339)
Name: NF2793_high_9
Description: NF2793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2793_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 7449053 - 7448728
Alignment:
| Q |
1 |
cattgcttatgctctactcaactgtgttggatgaacaagagtgagtgaaggttctggtcacgnnnnnnnnnnnnnnnnnnnnnncttgtcaacaaaaaga |
100 |
Q |
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| T |
7449053 |
cattgcttatgctctactcaactgtgttggatgaacaagagtgagtgaaggttctggtcacgagaagaaagaagaaaagaaaaacttgtcaacaaaaaga |
7448954 |
T |
|
| Q |
101 |
tggaatttattggttaatagataaataaataa----------------gttagataaacatgacaccatgatcaataagctaccattccatgtaaacaaa |
184 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7448953 |
tggaatttattggttaatagataaataaataaataaataaataaataagttagataaacatgacaccatgatcaataagctaccattccatgtaaacaaa |
7448854 |
T |
|
| Q |
185 |
gaaaaataggtaacccaccatcccatgccactatcatcatcacttgccatttactaacatttttatattatatactctacatatatatacacattatgtg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7448853 |
gaaaaataggtaacccaccatcccatgccactatcatcatcacttgccatttactaacatttttatattatatactctacatatatatacacattatgtg |
7448754 |
T |
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| Q |
285 |
tacttgtgtcgtcaggatcgatataa |
310 |
Q |
| |
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|||||||||||||||| ||||||||| |
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| T |
7448753 |
tacttgtgtcgtcagggtcgatataa |
7448728 |
T |
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