View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2794_high_1 (Length: 475)
Name: NF2794_high_1
Description: NF2794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2794_high_1 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 51739380 - 51739836
Alignment:
| Q |
19 |
attaggcccaatgtcacatattcgatgcataaaagaaacattctttcctgccaattccatgaattactacgaagttgtgagcttcttttgtcgaataaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51739380 |
attaggcccaatgtcacatattcgatgcataaaagaaacattctttcctgccaattccatgaattactacgaagttgtgagcttcttttgtcgaataaat |
51739479 |
T |
|
| Q |
119 |
ttcatgtttttatttggcttagagatgaatattcaatacgcattgcgtaatctacgtttagtgagcttggtagcatgtggtggtgtggtaatgggtgtaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51739480 |
ttcatgtttttatttggcttagagatgaatattcaatacgcattgcgtaatctacgtttagtgagcttggtagcatgtggtggtgtggtaatgggtgtaa |
51739579 |
T |
|
| Q |
219 |
tttttggtctatctgtctcattttatttatatcaagaattaggcatcgatggttcaaggttttatttctgtatgattattatgttagttgtatcatacac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51739580 |
tttttggtctatctgtctcattttatttatatcaagaattaggcatcgatggttcaaggttttatttctgtatgattattatgttagttgtatcatacac |
51739679 |
T |
|
| Q |
319 |
aagttcccctatggtcatccgtttggcagcagatttaaggtttgccgcatctgatgtcggtcgaatcgctgtgtctgccgcattgattgtagaaatgggt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
51739680 |
aagttcccctatggtcatccgtttggcagcagatttaaggtttgccgcatctgatgtcggtcgaatcgctgtgtccgccgcattgattgtagaaatgggt |
51739779 |
T |
|
| Q |
419 |
tgcttattggtgtttaatatgatggttaatacgaagatggatgataagaagtataat |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51739780 |
tgcttattggtgtttaatatgatggttaatacgaagatggatgataagaagtataat |
51739836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 10200070 - 10200216
Alignment:
| Q |
19 |
attaggcccaatgtcacatattcgatgcataaaagaaacattctttcctgccaattccatgaattactacgaagttgtgagcttcttttgtcgaataaat |
118 |
Q |
| |
|
|||||| |||||||| ||||||| || |||||||| ||||||||||| |||| |||||| |||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
10200070 |
attaggtccaatgtctcatattccatatataaaagagacattctttccagccagttccataaattactatcaagtagtgagcttcttttgtcgcataaat |
10200169 |
T |
|
| Q |
119 |
ttcatgtttttatttggcttagagatgaatattcaatacgcattgcg |
165 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||| ||||||| |
|
|
| T |
10200170 |
ttcatgtttttatttggcttggaaatgaatattcactacacattgcg |
10200216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 427
Target Start/End: Original strand, 10200350 - 10200481
Alignment:
| Q |
296 |
attatgttagttgtatcatacacaagttcccctatggtcatccgtttggcagcagatttaaggtttgccgcatctgatgtcggtcgaatcgctgtgtctg |
395 |
Q |
| |
|
|||||| || | |||||||||||||| ||||| ||||| || |||||| | || || ||| | ||||| ||||| ||| |||| |||||||| |||||| |
|
|
| T |
10200350 |
attatgctaatggtatcatacacaagctcccccatggtgattcgtttgacggcggagttacgatttgctgcatccgatatcgggcgaatcgcggtgtctt |
10200449 |
T |
|
| Q |
396 |
ccgcattgattgtagaaatgggttgcttattg |
427 |
Q |
| |
|
| || |||||| |||||||| |||||||||| |
|
|
| T |
10200450 |
cagcgttgattacagaaatggcttgcttattg |
10200481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University