View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2794_high_11 (Length: 285)
Name: NF2794_high_11
Description: NF2794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2794_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 53175468 - 53175207
Alignment:
| Q |
9 |
cacagacacggacacagagttatctatttcattgtcctctgttttgcatgaaacagagtactctgtttgatattcattgtgatgaggtatataagaacag |
108 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53175468 |
cacaaacacagacacagagttatctatttcattgtcctctgttttgcatgaaacagagtactctgtttgatattcattgtgatgaggtatataagaacag |
53175369 |
T |
|
| Q |
109 |
gcagcttcaagaggctcttctcatttaccaaacgtggtttaggggaaccagttctgagtcccaaaggtgaagaaaatgaaaagagcttgaagattcttcc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53175368 |
gcagcttcaagaggctcttctcatttaccaaacgtggtttaggggaaccagttctgagtcccaaaggtgaagaaaatgaaaagagcttgaagattcttcc |
53175269 |
T |
|
| Q |
209 |
atatgaagaagaaacttgtcaaagaccaacttggaaatgtttctcttatgaagagttgtttg |
270 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
53175268 |
atatgaagaagaaacttgtcaaaaaccaacatggaaatgtttctcttatgaagagttgtttg |
53175207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University