View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2794_high_15 (Length: 252)
Name: NF2794_high_15
Description: NF2794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2794_high_15 |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 50185150 - 50185391
Alignment:
| Q |
11 |
cacagacaaaaactagctgatcaactagcagaaacaatctgccaaccatcaactcggggcacggagattcgaacaacgacattagcattgaaaaatctcg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50185150 |
cacagacaaaaactagctgatcaactagcagaaacaatctgccaaccatcaactcggggcacggagattcgaacaacggcattagcattgaaaaatctcg |
50185249 |
T |
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| Q |
111 |
gggacggtcctcgtgctcatacgctactacttaaatcacacaaagaaaaattgaaacgtaacatgcaaagtctcgagtcgacaacttatggaggagttag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50185250 |
gggacggtcctcgtgctcatacgctactacttaaatcacacagaaaaaaattgaaacgtaacatgcaaagtctcgagtcgacaacttatggaggagttag |
50185349 |
T |
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| Q |
211 |
tgcatacactgcatcaatttcacaccttgttttttcaaccat |
252 |
Q |
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| T |
50185350 |
tgcatacactgcatcaatttcacaccttgttttttcaaccat |
50185391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 16296485 - 16296253
Alignment:
| Q |
11 |
cacagacaaaaactagctgatcaactagcagaaacaatctgccaaccatcaactcggggcacggagattcgaacaacgacattagcattgaaaaatctcg |
110 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| |||| | ||||||||||||||||| | |
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| T |
16296485 |
cacagacaaaaactagctgatcagctagcagacacaatctgccaaccatcaactcgccgcgcggagattcgatcaaccgcgttagcattgaaaaatcttg |
16296386 |
T |
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| Q |
111 |
gggacggtcctcgtgctcatacgctactacttaaatcacacaaagaaaaattgaaacgtaacatgcaaagtctcgagtcgacaacttatggaggagttag |
210 |
Q |
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| T |
16296385 |
gggacggtcctcgagctcatacattactacttaaatcttacaaagaaaagttgaatcgtaacatacaaagccttgagtccacaac---------agttag |
16296295 |
T |
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| Q |
211 |
tgcatacactgcatcaatttcacaccttgttttttcaaccat |
252 |
Q |
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| T |
16296294 |
tgcatacactgcatctgtttcacatcttgttttttcaaccat |
16296253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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