View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2794_high_20 (Length: 243)
Name: NF2794_high_20
Description: NF2794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2794_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 50185593 - 50185818
Alignment:
| Q |
1 |
tttagaggctagtggaatggcactttcacctgtgttacttaaacattttagaccatttgttgagcaagcacttaacacaaatttgaaaagaattgaacaa |
100 |
Q |
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| T |
50185593 |
tttagaggctagtggaatggcactttcacctgtgttacttaaacattttagaccatttgttgagcaagcacttaacacaaatttgaaaagaattgaacaa |
50185692 |
T |
|
| Q |
101 |
agtagtgctgctttagctgctgctgatgattggctgcttgcttatgcaccaaccagtaggaatactaatactggcctacgcccggtttcttcttattcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50185693 |
agtagtgctgctttagctgctgctgatgattggctgcttgcttatgcaccaaccagtaggaatactaatactggcctacgcccggtttcttcttattcta |
50185792 |
T |
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| Q |
201 |
gtttgaattcataccagcctaagctt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
50185793 |
gtttgaattcataccagcctaagctt |
50185818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 16296051 - 16295820
Alignment:
| Q |
1 |
tttagaggctagtggaatggcactttcacctgtgttacttaaacattttagaccatttgttgagcaagcacttaacacaaatttgaaaagaattgaacaa |
100 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16296051 |
tttagagtctagtggaatggcactttcacctgtgttgcttaaacattttagaccatttgttgagcaagcacttatcacaaatttgaaaagaattgaacaa |
16295952 |
T |
|
| Q |
101 |
agtagtgctgctttagctgctgctgatgattggctgcttgcttatgcaccaac------cagtaggaatactaatactggcctacgcccggtttcttctt |
194 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||| || | |||||| | |||||| ||||||| || |||||||||| |
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| T |
16295951 |
agtagtgctgctttagcttctgctgatgattggttgcttgcttatgcaccgactactagaactaggaaaagtaataccggcctacctcctgtttcttctt |
16295852 |
T |
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| Q |
195 |
attctagtttgaattcataccagcctaagctt |
226 |
Q |
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|||||| |||||||||| |||||||||||||| |
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| T |
16295851 |
attctaatttgaattcacaccagcctaagctt |
16295820 |
T |
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