View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2794_high_22 (Length: 233)

Name: NF2794_high_22
Description: NF2794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2794_high_22
NF2794_high_22
[»] chr5 (14 HSPs)
chr5 (21-213)||(37408332-37408524)
chr5 (25-164)||(41996205-41996344)
chr5 (25-112)||(42840495-42840582)
chr5 (25-111)||(24655513-24655599)
chr5 (25-111)||(29416782-29416868)
chr5 (25-111)||(39724553-39724639)
chr5 (44-155)||(21699533-21699644)
chr5 (25-112)||(28019148-28019235)
chr5 (31-113)||(42777784-42777866)
chr5 (44-155)||(42730048-42730159)
chr5 (32-156)||(42413949-42414073)
chr5 (62-111)||(16486776-16486825)
chr5 (80-165)||(42406629-42406714)
chr5 (62-106)||(40549282-40549326)
[»] chr1 (4 HSPs)
chr1 (36-98)||(19225436-19225498)
chr1 (36-98)||(19219179-19219241)
chr1 (36-98)||(19221525-19221587)
chr1 (31-112)||(361884-361965)
[»] scaffold0068 (1 HSPs)
scaffold0068 (44-155)||(14266-14377)
[»] scaffold0129 (1 HSPs)
scaffold0129 (25-112)||(17137-17224)
[»] chr8 (5 HSPs)
chr8 (61-113)||(15631880-15631932)
chr8 (40-103)||(15338146-15338209)
chr8 (40-103)||(15427211-15427274)
chr8 (40-103)||(15518515-15518578)
chr8 (61-113)||(15600597-15600649)
[»] chr6 (2 HSPs)
chr6 (40-112)||(29300085-29300157)
chr6 (40-107)||(29012844-29012911)
[»] chr2 (1 HSPs)
chr2 (40-112)||(44937794-44937866)
[»] chr4 (1 HSPs)
chr4 (33-98)||(48741975-48742040)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 37408332 - 37408524
Alignment:
Q  21 atggtcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcg 120  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37408332 atggccaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctca 37408431  T
Q  121 gtatcatgtaccataaaagcaatagatccattcaataccatcaagcgtcttcggaccaaaggaaaatccaaactatcatatacgtaagagggt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37408432 gtatcatgtaccataaaagcaatagatccattcaataccatcaagcgtcttcggaccaaatgaaaatccaaactatcatatacgtaagagggt 37408524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 41996205 - 41996344
Alignment:
Q  25 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtat 124  Q
    |||||| || |||| || ||||||| ||| ||||| |||||||||||||||||| | || |||||||||||| |||||||||||||||| | || |||||    
T  41996205 tcaaggtaatgtaaaggcccaacaatgaagagcttagtccatgattcctttacatcaagttcacccaaaattaaaatgtgaaatgtagatgtcttggtat 41996304  T
Q  125 catgtaccataaaagcaatagatccattcaataccatcaa 164  Q
     || || ||||||||||||||||||||| |||||||||||    
T  41996305 gatttaacataaaagcaatagatccatttaataccatcaa 41996344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 42840495 - 42840582
Alignment:
Q  25 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 112  Q
    ||||||||||||||||| |||||||  || |  || ||||||||||| |||||||| || ||||||||||||||||||||||||||||    
T  42840495 tcaaggcaaggtaagggaccaacaataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaatgtag 42840582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 24655599 - 24655513
Alignment:
Q  25 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 111  Q
    ||||||||||| ||||| || ||||  || | ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  24655599 tcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgta 24655513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 29416782 - 29416868
Alignment:
Q  25 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 111  Q
    ||||||||||| ||||| || ||||  || | ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  29416782 tcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgta 29416868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 39724553 - 39724639
Alignment:
Q  25 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 111  Q
    |||||||||||||| |||||||||| ||| || || ||||||||||| |||| |||||| || ||||||||||| ||||||||||||    
T  39724553 tcaaggcaaggtaaaggtccaacaatgaagagtttagtccatgattcttttataccgagttcccccaaaattgatatgtgaaatgta 39724639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 21699644 - 21699533
Alignment:
Q  44 caacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtaccataaaagcaat 143  Q
    |||| ||||| || || |||||||| ||||||| ||||||||||||||||||| ||||||||| | |||| | |||  ||| |||||  || ||||||||    
T  21699644 caactacgaagagtttggtccatgaatcctttataccgagctcacccaaaattaaaatgtgaagtatagatgtctctatataatgtaagattaaagcaat 21699545  T
Q  144 agatccattcaa 155  Q
    ||||||||||||    
T  21699544 agatccattcaa 21699533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 28019235 - 28019148
Alignment:
Q  25 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 112  Q
    |||||||||||||| ||||| |||||||| |  || |||||||||||||||||||  || |||||||| ||||||||||||| |||||    
T  28019235 tcaaggcaaggtaatggtcctacaacgaagattttagtccatgattcctttacactaagttcacccaagattgaaatgtgaattgtag 28019148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 42777866 - 42777784
Alignment:
Q  31 caaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtaga 113  Q
    ||||||||||| || |||| ||| | ||| ||||||||||| ||||||||||| || || |||||||||||||||||||||||    
T  42777866 caaggtaagggccctacaatgaagatcttagtccatgattcttttacaccgagttcgcctaaaattgaaatgtgaaatgtaga 42777784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 42730159 - 42730048
Alignment:
Q  44 caacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtaccataaaagcaat 143  Q
    |||| ||||| || || |||||||| ||||||| |||||| |||||||||||| ||||||||| | |||| | |||  ||| |||||  || ||||||||    
T  42730159 caactacgaagagtttggtccatgaatcctttataccgaggtcacccaaaattaaaatgtgaagtatagatgtctctatataatgtaagatgaaagcaat 42730060  T
Q  144 agatccattcaa 155  Q
    ||||||||||||    
T  42730059 agatccattcaa 42730048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 42414073 - 42413949
Alignment:
Q  32 aaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtac 131  Q
    ||||||||||||||||||  || || || |||||||| ||||||||||| |  || ||||||||||||||||||| |||| | | ||| |||| || ||     
T  42414073 aaggtaagggtccaacaataaagagtttagtccatgactcctttacaccaaattcgcccaaaattgaaatgtgaattgtaaatgtctcagtataatttaa 42413974  T
Q  132 cataaaagcaatagatccattcaat 156  Q
     ||  |||||||||| |||||||||    
T  42413973 gatgtaagcaatagagccattcaat 42413949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 16486776 - 16486825
Alignment:
Q  62 tccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 111  Q
    ||||||||| ||||||||| |  ||||| |||||||||||||||||||||    
T  16486776 tccatgatttctttacaccaaattcacctaaaattgaaatgtgaaatgta 16486825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 42406714 - 42406629
Alignment:
Q  80 cgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtaccataaaagcaatagatccattcaataccatcaag 165  Q
    |||| |||| ||||||||||||||||||||||||   ||  ||||||| ||  || |||||||||||  ||||||||| |||||||    
T  42406714 cgagttcactcaaaattgaaatgtgaaatgtagatatctttgtatcatttaagatgaaagcaatagactcattcaatatcatcaag 42406629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 40549326 - 40549282
Alignment:
Q  62 tccatgattcctttacaccgagctcacccaaaattgaaatgtgaa 106  Q
    ||||||||||||| |||||||  |||||||||||||| |||||||    
T  40549326 tccatgattccttcacaccgacttcacccaaaattgatatgtgaa 40549282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 19225436 - 19225498
Alignment:
Q  36 taagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattga 98  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  19225436 taagggtccaacatcgaagagcttagtccatgattccttgacaccgagctcacccaaaattga 19225498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 19219179 - 19219241
Alignment:
Q  36 taagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattga 98  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||| ||||||||||||||    
T  19219179 taagggtccaacatcgaagagcttagtccatgattccttgacaccgagttcacccaaaattga 19219241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 19221587 - 19221525
Alignment:
Q  36 taagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattga 98  Q
    ||||||||||||| | || ||||| |||||||||||||| ||| |||||||||||||||||||    
T  19221587 taagggtccaacatcaaagagcttagtccatgattccttcacatcgagctcacccaaaattga 19221525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 361965 - 361884
Alignment:
Q  31 caaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 112  Q
    |||| ||| |||||||||| ||| |||||  ||||||||||||| |||||||  ||||| | |||||| |||||||| ||||    
T  361965 caagataatggtccaacaatgaagagctttatccatgattccttcacaccgatttcaccaagaattgatatgtgaaaagtag 361884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 14266 - 14377
Alignment:
Q  44 caacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtaccataaaagcaat 143  Q
    |||| ||||| || || |||||||| ||||||| ||||||||||||||||||| ||||||||| | |||| | |||  ||| |||||  || ||||||||    
T  14266 caactacgaagagtttggtccatgaatcctttataccgagctcacccaaaattaaaatgtgaagtatagatgtctctatataatgtaagattaaagcaat 14365  T
Q  144 agatccattcaa 155  Q
    ||||||||||||    
T  14366 agatccattcaa 14377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 17137 - 17224
Alignment:
Q  25 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 112  Q
    |||| ||||||||| ||||||| |||||| || || ||||| || ||||| |||||||| ||||||| ||| ||||||||||| ||||    
T  17137 tcaatgcaaggtaaaggtccaataacgaagagtttagtccaagactccttcacaccgagttcacccagaatagaaatgtgaaaagtag 17224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 15631880 - 15631932
Alignment:
Q  61 gtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtaga 113  Q
    |||||||||||  |||||||| | ||||||||||||||||||||| |||||||    
T  15631880 gtccatgattctattacaccgggttcacccaaaattgaaatgtgatatgtaga 15631932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 15338146 - 15338209
Alignment:
Q  40 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgt 103  Q
    ||||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||| ||||    
T  15338146 ggtccaacaacaaatagtttagtccatgattctttcacgccgagttcacccaaaattgatatgt 15338209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 15427211 - 15427274
Alignment:
Q  40 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgt 103  Q
    ||||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||| ||||    
T  15427211 ggtccaacaacaaatagtttagtccatgattctttcacgccgagttcacccaaaattgatatgt 15427274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 15518515 - 15518578
Alignment:
Q  40 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgt 103  Q
    ||||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||| ||||    
T  15518515 ggtccaacaacaaatagtttagtccatgattctttcacgccgagttcacccaaaattgatatgt 15518578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 15600597 - 15600649
Alignment:
Q  61 gtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtaga 113  Q
    |||||||||||  |||||||| | |||||||||||||| |||||| |||||||    
T  15600597 gtccatgattctattacaccgggttcacccaaaattgagatgtgatatgtaga 15600649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 29300157 - 29300085
Alignment:
Q  40 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 112  Q
    |||||||||  ||| || || ||||| |||||||||| || |||||||||||||||||| |||||||| ||||    
T  29300157 ggtccaacattgaagagattggtccacgattcctttatactgagctcacccaaaattgatatgtgaaaagtag 29300085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 29012911 - 29012844
Alignment:
Q  40 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaa 107  Q
    |||||||||| ||| || || |||||||||||||| |||||||  || ||||||||||| ||||||||    
T  29012911 ggtccaacaatgaagagtttggtccatgattccttcacaccgaaatcccccaaaattgatatgtgaaa 29012844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 44937794 - 44937866
Alignment:
Q  40 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 112  Q
    ||||||||||| || || || ||||||||||| || || ||||| |||||||||||||| |||||||| ||||    
T  44937794 ggtccaacaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaaagtag 44937866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 48741975 - 48742040
Alignment:
Q  33 aggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattga 98  Q
    |||||||||||||| || ||| || || ||||| |||||||| |||||||| ||||| ||||||||    
T  48741975 aggtaagggtccaaaaatgaagagtttagtccaagattccttcacaccgagttcacctaaaattga 48742040  T

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