View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2794_high_5 (Length: 379)
Name: NF2794_high_5
Description: NF2794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2794_high_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 379
Target Start/End: Complemental strand, 49979208 - 49978832
Alignment:
| Q |
17 |
agaatccaaagtagctgaggttgtgaatgatctcaaaagctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataacc |
116 |
Q |
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| T |
49979208 |
agaatccaaagtagctgaggttgtgaatgagctcaaaagctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataacc |
49979109 |
T |
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| Q |
117 |
ctagctatctgtcagcaccttaattaattatgaatcatctatctctctctct--------------ggatatacatacatacattacagatagctagcgt |
202 |
Q |
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| T |
49979108 |
ctagctatctgtcagcaccttaattaattatgaatcatctatctctctctctctctctctctctctggatatacatacatacattacagatagctagcgt |
49979009 |
T |
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| Q |
203 |
gtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggatgatgatctggaaaaccttgtccaaccggtgcacc |
302 |
Q |
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| T |
49979008 |
gtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggatgatgatctggaaaaccttgtccaaccggtgcacc |
49978909 |
T |
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| Q |
303 |
tatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatgactcacatgac |
379 |
Q |
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| T |
49978908 |
tatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatgactcacatgac |
49978832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 49952122 - 49952178
Alignment:
| Q |
279 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
335 |
Q |
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| T |
49952122 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
49952178 |
T |
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