View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2794_high_6 (Length: 343)
Name: NF2794_high_6
Description: NF2794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2794_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 5401124 - 5400838
Alignment:
| Q |
18 |
gacacgaggagctggtttcttaagctgttcttagaattgaataaggacactacttgtacagttatgcacacacgatcacaaacatcttttacggtgaaaa |
117 |
Q |
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| T |
5401124 |
gacacgaggagctggtttcttaagctgttcttagaattgaataaggacactacttgtacagttatgcacacacgatcacaaacatcttttacggtgaaaa |
5401025 |
T |
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| Q |
118 |
aagcttaacttctcctcgattaggataactcaaaacccagattccccagcttaaagaaaacaactagaaccccactatatatagtaactttttggttttt |
217 |
Q |
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| T |
5401024 |
aagcttaacttctcctcgattaggataactcaaaacccagattccccagcttaaagaaaacaactagaaccccactatatatagtaactttttggttttt |
5400925 |
T |
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| Q |
218 |
gttaaaaaatgcactatcttactagaatcaatgctaggttcatttcaatcttttttaagtttattagaaatatttgtgtaataagccc |
305 |
Q |
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| T |
5400924 |
gttaaaaaatgcactatcttactagaatcaatgctaggttcatttcaatct-ttttaagtttattagagatatttgtgtaataagccc |
5400838 |
T |
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