View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2794_low_1 (Length: 560)
Name: NF2794_low_1
Description: NF2794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2794_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 10 - 541
Target Start/End: Complemental strand, 13141769 - 13141236
Alignment:
| Q |
10 |
gacatcatcactgatcaagaaagaatttctgagcatgttgtttcttattataaaaatttgnnnnnnnctactaactattttttgcaagatcagtcacttg |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
13141769 |
gacatcatcactgatcaagaaagaatttctgagcatgttgtttcttattataaaaatttgtttttttctactaactattttttgcaggatcagtcacttg |
13141670 |
T |
|
| Q |
110 |
tcgaagaggcaataccaaagcttgttgataaaacttcaaacaggattctcacaatgttacgatcaaaagaagaagtaaaaaatgcagtctttgatttaaa |
209 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13141669 |
tcgaagaggcaatcccaaagcttgttgatgaaacttcaaacaggattctcacaatgttaccatcaaaagaagaagtaaaaaatgcagtctttgatttaaa |
13141570 |
T |
|
| Q |
210 |
ctcagatggtgcacctggacctgatgggtttggtgcnnnnnnnn--caatcatattggagtattgtgcagaaggatgtttatgaagctgtgcttgatttt |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13141569 |
ctcagatggtgcacctggacctgatgggtttggtgcttgtttttttcaatcatattggagtattgtgcagaaggatgtttatgaagctgtgcttgatttt |
13141470 |
T |
|
| Q |
308 |
ttcagaattggtttgttccccaccaatttcaatgctaactcaatcattcttattccaaaaactcccaatgctgatagtattgatcaatttcgacctattg |
407 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13141469 |
ttcagaactggtttgtttcccaccaatttcaatgctaactcaatcattcttattccaaaaactcccaatgctgatagtattgatcaatttcgacctattg |
13141370 |
T |
|
| Q |
408 |
ctctagccaattttaaattcaaaatcatcagcaaagttcttgctgataggttagcaaaaattcttcctagtatcatctcaaaagaacaaagagtttttgt |
507 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13141369 |
ctctagccaatttcaaattcaaaatcatcagcaaagttcttgctgataggttagcaaaaattcttcctagtatcatctcaaaagaacaaagaggttttgt |
13141270 |
T |
|
| Q |
508 |
tcaaggcaggaacataagagattgcattgccctt |
541 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
13141269 |
tcaaggcaggaacataagagattgcattgccctt |
13141236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 10 - 541
Target Start/End: Complemental strand, 24560469 - 24559936
Alignment:
| Q |
10 |
gacatcatcactgatcaagaaagaatttctgagcatgttgtttcttattataaaaatttgnnnnnnnctactaactattttttgcaagatcagtcacttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
24560469 |
gacatcatcactgatcaagaaagaatttctgagcatgttgtttcttattataaaaatttgtttttttctactaactattttttgcaggatcagtcacttg |
24560370 |
T |
|
| Q |
110 |
tcgaagaggcaataccaaagcttgttgataaaacttcaaacaggattctcacaatgttacgatcaaaagaagaagtaaaaaatgcagtctttgatttaaa |
209 |
Q |
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|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24560369 |
tcgaagaggcaatcccaaagcttgttgatgaaacttcaaacaggattctcacaatgttaccatcaaaagaagaagtaaaaaatgcagtctttgatttaaa |
24560270 |
T |
|
| Q |
210 |
ctcagatggtgcacctggacctgatgggtttggtgcnnnnnnnn--caatcatattggagtattgtgcagaaggatgtttatgaagctgtgcttgatttt |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24560269 |
ctcagatggtgcacctggacctgatgggtttggtgcttgtttttttcaatcatattggagtattgtgcagaaggatgtttatgaagctgtgcttgatttt |
24560170 |
T |
|
| Q |
308 |
ttcagaattggtttgttccccaccaatttcaatgctaactcaatcattcttattccaaaaactcccaatgctgatagtattgatcaatttcgacctattg |
407 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24560169 |
ttcagaactggtttgtttcccaccaatttcaatgctaactcaatcattcttattccaaaaactcccaatgctgatagtattgatcaatttcgacctattg |
24560070 |
T |
|
| Q |
408 |
ctctagccaattttaaattcaaaatcatcagcaaagttcttgctgataggttagcaaaaattcttcctagtatcatctcaaaagaacaaagagtttttgt |
507 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24560069 |
ctctagccaatttcaaattcaaaatcatcagcaaagttctcgctgataggttagcaaaaattcttcctagtatcatctcaaaagaacaaagaggttttgt |
24559970 |
T |
|
| Q |
508 |
tcaaggcaggaacataagagattgcattgccctt |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
24559969 |
tcaaggcaggaacataagagattgcattgccctt |
24559936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 20751503 - 20751442
Alignment:
| Q |
371 |
cccaatgctgatagtattgatcaatttcgacctattgctctagccaattttaaattcaaaat |
432 |
Q |
| |
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||||||||||| | |||||||||||| |||| |||||||| |||||||||||||| ||||| |
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| T |
20751503 |
cccaatgctgacaccattgatcaatttagacccattgctcttgccaattttaaatttaaaat |
20751442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 146 - 537
Target Start/End: Complemental strand, 34245244 - 34244851
Alignment:
| Q |
146 |
caaacaggattctcacaatgttacgatcaaaagaagaagtaaaaaatgcagtctttgatttaaactcagatggtgcacctggacctgatgggtttggtgc |
245 |
Q |
| |
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|||||||| | ||||| ||||||| | ||||||| ||||| ||||||||||| |||||||||||||| |||| ||| ||||||||||||| ||||| || |
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| T |
34245244 |
caaacaggctgctcaccatgttaccaacaaaagaggaagttaaaaatgcagtttttgatttaaactctgatgatgcccctggacctgatgtatttggagc |
34245145 |
T |
|
| Q |
246 |
nnnnnnnn--caatcatattggagtattgtgcagaaggatgtttatgaagctgtgcttgattttttcagaattggtttgttccccaccaatttcaatgct |
343 |
Q |
| |
|
||| || |||| |||||| | || ||||| ||||||||||| || || ||||||| || ||||| ||| || | || |||||||| |
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|
| T |
34245144 |
ttgttttttccaaatctactggaatattgtcaaaaaagatgtctatgaagctgttctggactttttcaaaaatggttggttaccaaataacttcaatgca |
34245045 |
T |
|
| Q |
344 |
aactcaatcattcttattccaaaaactcccaatgctgatagtattgatcaatttcgacctattgctctagccaattttaaattcaaaatcatcagcaaag |
443 |
Q |
| |
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||||| ||||| ||||| ||||| |||||||||||||||||| | ||||||| || |||||||| | | |||||||||||||||||| |||| ||| | |
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| T |
34245044 |
aactctatcatacttatcccaaagactcccaatgctgatagtgtagatcaatacagaactattgctttggtcaattttaaattcaaaattatcaacaagg |
34244945 |
T |
|
| Q |
444 |
ttcttgctgataggttagcaaaaattcttcctagtatcatctcaaaagaacaaagagtttttgttcaaggcaggaacataagagattgcattgc |
537 |
Q |
| |
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|| | || |||||||||||||| ||||||||||| || || || || |||||||||| ||||| ||||| |||||||||||||| || ||||| |
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| T |
34244944 |
ttttagcagataggttagcaaagattcttcctagcattatttctaaggaacaaagagggtttgtacaaggaaggaacataagagactgtattgc |
34244851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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