View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2794_low_10 (Length: 326)
Name: NF2794_low_10
Description: NF2794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2794_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 71 - 305
Target Start/End: Complemental strand, 52002003 - 52001769
Alignment:
| Q |
71 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
170 |
Q |
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| T |
52002003 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaactacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
52001904 |
T |
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| Q |
171 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
270 |
Q |
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| T |
52001903 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
52001804 |
T |
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| Q |
271 |
cacgcattcatagtgtttcagagaataaagaaaaa |
305 |
Q |
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| T |
52001803 |
cacgcattcatagtgtttcagagaataaagaaaaa |
52001769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 52002040 - 52002002
Alignment:
| Q |
1 |
ttgaaaacacttccgatccaaaaggaaagaaaccactca |
39 |
Q |
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| T |
52002040 |
ttgaaaacacttctgatccaaaaggaaagaaaccactca |
52002002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 52011878 - 52011785
Alignment:
| Q |
85 |
atcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgatgatagcga |
178 |
Q |
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| T |
52011878 |
atcagaggaaggaaataacagaaaatcaaatatcactggatttggatattaatgactatatcattaccaatgaaactgaaactaatgatagcga |
52011785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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