View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2794_low_12 (Length: 308)
Name: NF2794_low_12
Description: NF2794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2794_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 38 - 300
Target Start/End: Original strand, 25043905 - 25044183
Alignment:
| Q |
38 |
aagggggtctaatggttatataaagattatgtgattatggtgcatggttatataaaggaactcacaaagtcacatgctttaacgaggatagtgtatataa |
137 |
Q |
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| T |
25043905 |
aagggggtctaatggttatataaagattatgtgattatgctgcatggttatataaaggaactcacaaagtcgtatgctttaacgaggatagtgtatataa |
25044004 |
T |
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| Q |
138 |
agatttgaatcaaattcaatataaaatatnnnnnnnnnnn---------tgacagaacaaaattcataaaacttaaaa-------ttgnnnnnnnnnnnn |
221 |
Q |
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| T |
25044005 |
agatttgaatcaaattcaatatgaaatataaaaaaaataaaaaaaaaaatgacagaacaaaattcataaaacttaaaattggtttttggtttttggtttt |
25044104 |
T |
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| Q |
222 |
ngctgaatacataaggaaaattatacatttccataatccataaaataagtgtattcatggagtcttcaattagaataat |
300 |
Q |
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| T |
25044105 |
tgctgaatacataaggaaaattatacatttccataatccataaaataagtgtattcatggagtcttcaattagaataat |
25044183 |
T |
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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 89 - 286
Target Start/End: Original strand, 28649464 - 28649647
Alignment:
| Q |
89 |
ataaaggaactcacaaagtcacatgctttaacgaggatagtgtatataaagatttgaatcaaattcaatataaaatatnnnnnnnnnnntgacagaacaa |
188 |
Q |
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| T |
28649464 |
ataaaggaactcacaaagtcgcatgctttgatgaggagagtgtatatataaatttgaatcatattcaatatgaaacat-----aaaaaatgacagaacaa |
28649558 |
T |
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| Q |
189 |
aattcataaaacttaaaattgnnnnnnnnnnnnngctgaatacataaggaaaattatacatttccataatccataaaataagtgtattcatggagtct |
286 |
Q |
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| T |
28649559 |
aattcataaaatttaaaattg---------ttttgctaaattcataaggaaaattatacatttccataatccatactataagcgaattcatggagtct |
28649647 |
T |
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